#include <VoltageInterpolaterOntoMechanicsMesh.hpp>

Collaboration diagram for VoltageInterpolaterOntoMechanicsMesh< DIM >:

Public Member Functions
	VoltageInterpolaterOntoMechanicsMesh (TetrahedralMesh< DIM, DIM > &rElectricsMesh, QuadraticMesh< DIM > &rMechanicsMesh)

	~VoltageInterpolaterOntoMechanicsMesh ()

void	InterpolateOnCoarseMesh (std::vector< double > &rValuesOnCoarseMesh, ReplicatableVector &rValuesOnFineMesh)

void	OutputToCmgui (std::vector< std::string > &rVariableNames, std::string directory, std::string inputFileNamePrefix)

Private Attributes
TetrahedralMesh< DIM, DIM > &	mrElectricsMesh

QuadraticMesh< DIM > &	mrMechanicsMesh

FineCoarseMeshPair< DIM > *	mpMeshPair

Detailed Description

template<unsigned DIM>
class VoltageInterpolaterOntoMechanicsMesh< DIM >

A class which can be used to convert the voltage from an electrics (or electromechanics) simulation onto a coarser mechanics mesh, by interpolation. The class provides a method to interpolate values from the fine mesh onto the coarse mesh and the main method to output a HDF5 file corresponding to nodes on the mechanics mesh, and convert it to CMGUI output.

Definition at line 55 of file VoltageInterpolaterOntoMechanicsMesh.hpp.

Constructor & Destructor Documentation

◆ VoltageInterpolaterOntoMechanicsMesh()

template<unsigned DIM>

VoltageInterpolaterOntoMechanicsMesh< DIM >::VoltageInterpolaterOntoMechanicsMesh	(	TetrahedralMesh< DIM, DIM > &	rElectricsMesh,
		QuadraticMesh< DIM > &	rMechanicsMesh
	)

Constructor. Sets up the Mesh Pair object used for the interpolation later.

Parameters

rElectricsMesh	The electrics mesh
rMechanicsMesh	The mechanics mesh

Definition at line 45 of file VoltageInterpolaterOntoMechanicsMesh.cpp.

References AbstractMesh< ELEMENT_DIM, SPACE_DIM >::GetNumNodes(), and VoltageInterpolaterOntoMechanicsMesh< DIM >::mpMeshPair.

◆ ~VoltageInterpolaterOntoMechanicsMesh()

template<unsigned DIM>

VoltageInterpolaterOntoMechanicsMesh< DIM >::~VoltageInterpolaterOntoMechanicsMesh ( )

Destructor.

Definition at line 60 of file VoltageInterpolaterOntoMechanicsMesh.cpp.

Member Function Documentation

◆ InterpolateOnCoarseMesh()

template<unsigned DIM>

void VoltageInterpolaterOntoMechanicsMesh< DIM >::InterpolateOnCoarseMesh	(	std::vector< double > &	rValuesOnCoarseMesh,
		ReplicatableVector &	rValuesOnFineMesh
	)

Does the actual interpolation.

Parameters

rValuesOnCoarseMesh	It will be filled with the interpolated values. Memory must have been allocated before (this method checks): the vector must be of the same size as the number of nodes of the coarser mesh
rValuesOnFineMesh	The values on the fine mesh to be interpolated onto the coarser mesh

Definition at line 66 of file VoltageInterpolaterOntoMechanicsMesh.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNodeGlobalIndex(), and AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNumNodes().

◆ OutputToCmgui()

template<unsigned DIM>

void VoltageInterpolaterOntoMechanicsMesh< DIM >::OutputToCmgui	(	std::vector< std::string > &	rVariableNames,
		std::string	directory,
		std::string	inputFileNamePrefix
	)

The main method of the class. It reads the h5 files in directory (filename prefix inputFileNamePrefix) It then considers all the variables whose name is specified in rVariableNames, does the interplation using InterpolateOnCoarseMesh, and creates output for all the variables over all the time steps included in the h5 file. It does so by first writing out to h5 and then converting to CMGUI.

Parameters

rVariableNames	vector of names of variables contained in the input h5 file and that you want to be interpolated.
directory	Directory the voltage file is in
inputFileNamePrefix	Filename (without ".h5") of the electrics solution HDF5 file

Definition at line 84 of file VoltageInterpolaterOntoMechanicsMesh.cpp.

References Hdf5DataWriter::AdvanceAlongUnlimitedDimension(), RelativeTo::ChasteTestOutput, DistributedVectorFactory::CreateVec(), PetscTools::CreateVec(), Hdf5DataWriter::DefineFixedDimension(), Hdf5DataWriter::DefineUnlimitedDimension(), Hdf5DataWriter::DefineVariable(), PetscTools::Destroy(), Hdf5DataWriter::EndDefineMode(), HeartConfig::GetOutputDirectory(), Hdf5DataReader::GetUnlimitedDimensionValues(), Hdf5DataReader::GetVariableOverNodes(), HeartConfig::Instance(), Hdf5DataWriter::PutUnlimitedVariable(), Hdf5DataWriter::PutVector(), and HeartConfig::SetOutputDirectory().