DistributedVectorFactory.cpp

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*/
 
#include <cassert>
 
#include "DistributedVectorFactory.hpp"
#include "PetscTools.hpp"
 
// Initialise static data
bool DistributedVectorFactory::msCheckNumberOfProcessesOnLoad = true;
 
void DistributedVectorFactory::CalculateOwnership(Vec vec)
{
#ifndef NDEBUG
    if (!mPetscStatusKnown)
    {
        CheckForPetsc();
    }
#endif
 
    // Calculate my range
    PetscInt petsc_lo, petsc_hi;
    VecGetOwnershipRange(vec, &petsc_lo, &petsc_hi);
    mGlobalLows.clear();
    mLo = (unsigned)petsc_lo;
    mHi = (unsigned)petsc_hi;
    // vector size
    PetscInt size;
    VecGetSize(vec, &size);
    mProblemSize = (unsigned) size;
    mNumProcs = PetscTools::GetNumProcs();
}
 
void DistributedVectorFactory::SetFromFactory(DistributedVectorFactory* pFactory)
{
    if (pFactory->GetNumProcs() != mNumProcs)
    {
        EXCEPTION("Cannot set from a factory for a different number of processes.");
    }
    if (pFactory->GetProblemSize() != mProblemSize)
    {
        EXCEPTION("Cannot set from a factory for a different problem size.");
    }
    mGlobalLows.clear();
    mLo = pFactory->GetLow();
    mHi = pFactory->GetHigh();
}
 
DistributedVectorFactory::DistributedVectorFactory(Vec vec)
    : mPetscStatusKnown(false),
      mpOriginalFactory(nullptr)
{
    CalculateOwnership(vec);
}
 
DistributedVectorFactory::DistributedVectorFactory(unsigned size, PetscInt local)
    : mPetscStatusKnown(false),
      mpOriginalFactory(nullptr)
{
#ifndef NDEBUG
    CheckForPetsc();
#endif
    Vec vec = PetscTools::CreateVec(size, local);
    CalculateOwnership(vec);
    PetscTools::Destroy(vec);
}
 
DistributedVectorFactory::DistributedVectorFactory(DistributedVectorFactory* pOriginalFactory)
    : mPetscStatusKnown(false),
      mpOriginalFactory(pOriginalFactory)
{
    assert(mpOriginalFactory != nullptr);
 
    /*
     * Normally called when mpOriginalFactory->GetNumProcs() != PetscTools::GetNumProcs()
     * so ignore mpOriginalFactory->GetLocalOwnership()
     */
    Vec vec = PetscTools::CreateVec(mpOriginalFactory->GetProblemSize());
 
    CalculateOwnership(vec);
    PetscTools::Destroy(vec);
}
 
DistributedVectorFactory::DistributedVectorFactory(unsigned lo, unsigned hi, unsigned size, unsigned numProcs)
    : mLo(lo),
      mHi(hi),
      mProblemSize(size),
      mNumProcs(numProcs),
      mPetscStatusKnown(false),
      mpOriginalFactory(nullptr)
{
#ifndef NDEBUG
    CheckForPetsc();
#endif
}
 
DistributedVectorFactory::~DistributedVectorFactory()
{
    delete mpOriginalFactory;
}
 
void DistributedVectorFactory::CheckForPetsc()
{
    assert(mPetscStatusKnown==false);
    PetscBool petsc_is_initialised;
    PetscInitialized(&petsc_is_initialised);
 
    /*
     * Tripping this assertion means that PETSc and MPI weren't intialised.
     * A unit test should include the global fixture:
     * #include "PetscSetupAndFinalize.hpp"
     */
    assert(petsc_is_initialised);
    mPetscStatusKnown = true;
}
 
bool DistributedVectorFactory::IsGlobalIndexLocal(unsigned globalIndex)
{
    return (mLo<=globalIndex && globalIndex<mHi);
}
 
Vec DistributedVectorFactory::CreateVec()
{
    Vec vec = PetscTools::CreateVec(mProblemSize, mHi-mLo);
    return vec;
}
 
Vec DistributedVectorFactory::CreateVec(unsigned stride)
{
    Vec vec;
#if (PETSC_VERSION_MAJOR == 3 && PETSC_VERSION_MINOR >= 3) //PETSc 3.3 or later
    //In PETSc 3.3 we cannot alter the stride (block size) after it has been created
    //There is no VecCreateMPI with block size
    VecCreate(PETSC_COMM_WORLD, &vec);
    VecSetBlockSize(vec, stride);
    VecSetSizes(vec, stride*(mHi-mLo), stride*mProblemSize);
    VecSetType(vec,VECMPI);
    //VecCreateMPIWithArray(PETSC_COMM_WORLD, stride, stride*(mHi-mLo), stride*mProblemSize, CHASTE_PETSC_NULLPTR/*No array*/, &vec);
#else
    VecCreateMPI(PETSC_COMM_WORLD, stride*(mHi-mLo), stride*mProblemSize, &vec);
    VecSetBlockSize(vec, stride);
#endif
#if (PETSC_VERSION_MAJOR == 3) //PETSc 3.x.x
        VecSetOption(vec, VEC_IGNORE_OFF_PROC_ENTRIES, PETSC_TRUE);
#else
        VecSetOption(vec, VEC_IGNORE_OFF_PROC_ENTRIES);
#endif
    return vec;
}
 
DistributedVector DistributedVectorFactory::CreateDistributedVector(Vec vec, bool readOnly)
{
    DistributedVector dist_vector(vec, this, readOnly);
    return dist_vector;
}
 
std::vector<unsigned> &DistributedVectorFactory::rGetGlobalLows()
{
    if (mGlobalLows.size() != PetscTools::GetNumProcs())
    {
        assert( mGlobalLows.empty());
        mGlobalLows.resize(PetscTools::GetNumProcs());
 
        // Exchange data
        MPI_Allgather( &mLo, 1, MPI_UNSIGNED, &mGlobalLows[0], 1, MPI_UNSIGNED, PETSC_COMM_WORLD);
      }
 
    return  mGlobalLows;
}
 
// Serialization for Boost >= 1.36
#include "SerializationExportWrapperForCpp.hpp"
CHASTE_CLASS_EXPORT(DistributedVectorFactory)