Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
DistributedVectorFactory.hpp
1/*
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34*/
35
36#ifndef DISTRIBUTEDVECTORFACTORY_HPP_
37#define DISTRIBUTEDVECTORFACTORY_HPP_
38
40#include <petscvec.h>
41
42#include "DistributedVector.hpp"
43#include "Exception.hpp"
44#include "PetscTools.hpp"
45
58{
59private:
60
61 // Data global to all vectors created by this factory
62
64 unsigned mLo;
65
67 unsigned mHi;
68
70 unsigned mProblemSize;
71
73 unsigned mNumProcs;
74
77
79 std::vector<unsigned> mGlobalLows;
80
86
92
96 void CheckForPetsc();
97
103 void CalculateOwnership(Vec vec);
104
107
114 template<class Archive>
115 void serialize(Archive & archive, const unsigned int version)
116 {
117 // Nothing to do - all done in load_construct_data
118 }
119
120public:
121
128
135 DistributedVectorFactory(unsigned size, PetscInt local=PETSC_DECIDE);
136
145
155 DistributedVectorFactory(unsigned lo, unsigned hi, unsigned size,
156 unsigned numProcs=PetscTools::GetNumProcs());
157
160
166 Vec CreateVec();
167
174 Vec CreateVec(unsigned stride);
175
183 DistributedVector CreateDistributedVector(Vec vec, bool readOnly=false);
184
191 bool IsGlobalIndexLocal(unsigned globalIndex);
192
196 unsigned GetLocalOwnership() const
197 {
198 return mHi - mLo;
199 }
200
204 unsigned GetHigh() const
205 {
206 return mHi;
207 }
208
212 unsigned GetLow() const
213 {
214 return mLo;
215 }
216
220 unsigned GetProblemSize() const
221 {
222 return mProblemSize;
223 }
224
228 unsigned GetNumProcs() const
229 {
230 return mNumProcs;
231 }
232
239 static void SetCheckNumberOfProcessesOnLoad(bool checkNumberOfProcessesOnLoad=true)
240 {
241 msCheckNumberOfProcessesOnLoad = checkNumberOfProcessesOnLoad;
242 }
243
253
265
271 {
272 mpOriginalFactory = pOriginalFactory;
273 }
274
280
285 std::vector<unsigned> &rGetGlobalLows();
286
287// /**
288// * For debugging.
289// */
290// void Dump(std::string msg=std::string())
291// {
292// std::cout << "DVF(" << this << "): " << msg;
293// std::cout << " lo=" << mLo << " hi=" << mHi << " size=" << mProblemSize << " np=" << mNumProcs;
294// std::cout << " [running np=" << PetscTools::GetNumProcs() << " rank=" << PetscTools::GetMyRank() << "]\n" << std::flush;
295// }
296};
297
299// Declare identifier for the serializer
301
302namespace boost
303{
304namespace serialization
305{
306
307template<class Archive>
308inline void save_construct_data(
309 Archive & ar, const DistributedVectorFactory * t, const unsigned int file_version)
310{
311 unsigned num_procs, lo, hi, size;
312 hi = t->GetHigh();
313 ar << hi;
314 lo = t->GetLow();
315 ar << lo;
316 size = t->GetProblemSize();
317 ar << size;
318 num_procs = PetscTools::GetNumProcs();
319 ar << num_procs;
320}
321
326template<class Archive>
327inline void load_construct_data(
328 Archive & ar, DistributedVectorFactory * t, const unsigned int file_version)
329{
330 unsigned num_procs, lo, hi, size;
331 ar >> hi;
332 ar >> lo;
333 ar >> size;
334 ar >> num_procs;
335 DistributedVectorFactory* p_original_factory = new DistributedVectorFactory(lo, hi, size, num_procs);
336
338 {
339 ::new(t)DistributedVectorFactory(p_original_factory);
340 }
341 else
342 {
343 if (num_procs != PetscTools::GetNumProcs())
344 {
345 // We need to have a ::new here, or Boost will try to free non-allocated memory
346 // when the exception is thrown. However, if we use the ::new line after this if,
347 // then PETSc complains about wrong sizes.
348 ::new(t)DistributedVectorFactory(size);
349 EXCEPTION("This archive was written for a different number of processors");
350 }
351 ::new(t)DistributedVectorFactory(size, hi-lo);
352 t->SetOriginalFactory(p_original_factory);
353 }
354}
355
356}
357} // namespace ...
358
359#endif /*DISTRIBUTEDVECTORFACTORY_HPP_*/
#define EXCEPTION(message)
gcov doesn't like this file...
#define CHASTE_CLASS_EXPORT(T)
static void SetCheckNumberOfProcessesOnLoad(bool checkNumberOfProcessesOnLoad=true)
void SetOriginalFactory(DistributedVectorFactory *pOriginalFactory)
DistributedVectorFactory * GetOriginalFactory()
DistributedVector CreateDistributedVector(Vec vec, bool readOnly=false)
std::vector< unsigned > mGlobalLows
std::vector< unsigned > & rGetGlobalLows()
void SetFromFactory(DistributedVectorFactory *pFactory)
friend class boost::serialization::access
void serialize(Archive &archive, const unsigned int version)
DistributedVectorFactory * mpOriginalFactory
bool IsGlobalIndexLocal(unsigned globalIndex)
static unsigned GetNumProcs()