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Chaste Commit::333233612e3dcc941d260418acd7b5ccdc30390e
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#include <CellPopulationElementWriter.hpp>
Public Member Functions | |
CellPopulationElementWriter () | |
virtual void | Visit (MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
virtual void | Visit (CaBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
virtual void | Visit (NodeBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
virtual void | Visit (PottsBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
virtual void | Visit (VertexBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
virtual void | Visit (ImmersedBoundaryCellPopulation< SPACE_DIM > *pCellPopulation) |
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AbstractCellPopulationWriter (const std::string &rFileName) | |
virtual void | WriteHeader (AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
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AbstractCellBasedWriter (const std::string &rFileName) | |
virtual | ~AbstractCellBasedWriter () |
void | CloseFile () |
virtual void | OpenOutputFile (OutputFileHandler &rOutputFileHandler) |
void | OpenOutputFileForAppend (OutputFileHandler &rOutputFileHandler) |
virtual void | WriteTimeStamp () |
virtual void | WriteNewline () |
void | SetFileName (std::string fileName) |
std::string | GetFileName () |
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virtual | ~Identifiable () |
std::string | GetIdentifier () const |
Private Member Functions | |
template<class Archive > | |
void | serialize (Archive &archive, const unsigned int version) |
Friends | |
class | boost::serialization::access |
Additional Inherited Members | |
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std::string | mFileName |
out_stream | mpOutStream |
A class written using the visitor pattern for writing population elements from a cell population to file.
The output file is called results.vizelements by default.
Definition at line 49 of file CellPopulationElementWriter.hpp.
CellPopulationElementWriter< ELEMENT_DIM, SPACE_DIM >::CellPopulationElementWriter | ( | ) |
Default constructor.
Definition at line 46 of file CellPopulationElementWriter.cpp.
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inlineprivate |
Serialize the object and its member variables.
archive | the archive |
version | the current version of this class |
Definition at line 61 of file CellPopulationElementWriter.hpp.
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virtual |
Visit the population and write the data.
This is an empty dummy function, since this class is not defined for use with a CaBasedCellPopulation.
pCellPopulation | a pointer to the CaBasedCellPopulation to visit. |
Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 90 of file CellPopulationElementWriter.cpp.
References EXCEPTION.
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virtual |
Visit the ImmersedBoundaryCellPopulation and write data for each Element.
Outputs a line of space-separated values of the form: ...[num nodes in element] [node 0 index] [node 1 index] [node 2 index]...
where [node 0 index] denotes the global index of the Node that is contained in the Element with local index 0, and so on.
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
pCellPopulation | a pointer to the ImmersedBoundaryCellPopulation to visit. |
Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 174 of file CellPopulationElementWriter.cpp.
References AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::Begin(), AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::End(), AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetCellUsingLocationIndex(), ImmersedBoundaryCellPopulation< DIM >::GetElement(), ImmersedBoundaryMesh< ELEMENT_DIM, SPACE_DIM >::GetElement(), AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetLocationIndexUsingCell(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNodeGlobalIndex(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNumNodes(), AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::IsCellAttachedToLocationIndex(), and ImmersedBoundaryCellPopulation< DIM >::rGetMesh().
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virtual |
Visit the MeshBasedCellPopulation and write the index of each Element.
Outputs a line of space-separated values of the form: ...[element index]...
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
pCellPopulation | a pointer to the MeshBasedCellPopulation to visit. |
Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 52 of file CellPopulationElementWriter.cpp.
References AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetCellUsingLocationIndex(), AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::GetElementIteratorBegin(), AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::GetElementIteratorEnd(), MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetNode(), AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::IsCellAttachedToLocationIndex(), and MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::rGetMesh().
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virtual |
Visit the population and write the data.
This is an empty dummy function, since this class is not defined for use with a NodeBasedCellPopulation.
pCellPopulation | a pointer to the NodeBasedCellPopulation to visit. |
Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 96 of file CellPopulationElementWriter.cpp.
References EXCEPTION.
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virtual |
Visit the PottsBasedCellPopulation and write data for each Element.
Outputs a line of space-separated values of the form: ...[num nodes in element] [node 0 index] [node 1 index] [node 2 index]...
where [node 0 index] denotes the global index of the Node that is contained in the Element with local index 0, and so on.
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
pCellPopulation | a pointer to the PottsBasedCellPopulation to visit. |
Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 102 of file CellPopulationElementWriter.cpp.
References AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::Begin(), AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::End(), AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetCellUsingLocationIndex(), PottsBasedCellPopulation< DIM >::GetElement(), AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetLocationIndexUsingCell(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNodeGlobalIndex(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNumNodes(), AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::IsCellAttachedToLocationIndex(), and PottsBasedCellPopulation< DIM >::rGetMesh().
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virtual |
Visit the VertexBasedCellPopulation and write data for each Element.
Outputs a line of space-separated values of the form: ...[num nodes in element] [node 0 index] [node 1 index] [node 2 index]...
where [node 0 index] denotes the global index of the Node that is contained in the Element with local index 0, and so on.
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
pCellPopulation | a pointer to the VertexBasedCellPopulation to visit. |
Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 138 of file CellPopulationElementWriter.cpp.
References AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::Begin(), AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::End(), AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetCellUsingLocationIndex(), VertexBasedCellPopulation< DIM >::GetElement(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetElement(), AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetLocationIndexUsingCell(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNodeGlobalIndex(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNumNodes(), AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::IsCellAttachedToLocationIndex(), and VertexBasedCellPopulation< DIM >::rGetMesh().
Needed for serialization.
Definition at line 53 of file CellPopulationElementWriter.hpp.