#include <MonodomainTissue.hpp>

Inheritance diagram for MonodomainTissue< ELEMENT_DIM, SPACE_DIM >:

Collaboration diagram for MonodomainTissue< ELEMENT_DIM, SPACE_DIM >:

Public Member Functions
	MonodomainTissue (AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM > *pCellFactory, bool exchangeHalos=false)

	MonodomainTissue (AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh)

Public Member Functions inherited from AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
	AbstractCardiacTissue (AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM > *pCellFactory, bool exchangeHalos=false)

	AbstractCardiacTissue (AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh)

virtual	~AbstractCardiacTissue ()

bool	HasPurkinje ()

void	SetCacheReplication (bool doCacheReplication)

bool	GetDoCacheReplication ()

const c_matrix< double, SPACE_DIM, SPACE_DIM > &	rGetIntracellularConductivityTensor (unsigned elementIndex)

virtual const c_matrix< double, SPACE_DIM, SPACE_DIM > &	rGetExtracellularConductivityTensor (unsigned elementIndex)

AbstractCardiacCellInterface *	GetCardiacCell (unsigned globalIndex)

AbstractCardiacCellInterface *	GetPurkinjeCell (unsigned globalIndex)

AbstractCardiacCellInterface *	GetCardiacCellOrHaloCell (unsigned globalIndex)

virtual void	SolveCellSystems (Vec existingSolution, double time, double nextTime, bool updateVoltage=false)

ReplicatableVector &	rGetIionicCacheReplicated ()

ReplicatableVector &	rGetIntracellularStimulusCacheReplicated ()

ReplicatableVector &	rGetPurkinjeIionicCacheReplicated ()

ReplicatableVector &	rGetPurkinjeIntracellularStimulusCacheReplicated ()

void	UpdateCaches (unsigned globalIndex, unsigned localIndex, double nextTime)

void	UpdatePurkinjeCaches (unsigned globalIndex, unsigned localIndex, double nextTime)

void	ReplicateCaches ()

const std::vector< AbstractCardiacCellInterface * > &	rGetCellsDistributed () const

const std::vector< AbstractCardiacCellInterface * > &	rGetPurkinjeCellsDistributed () const

const AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *	pGetMesh () const

void	SetConductivityModifier (AbstractConductivityModifier< ELEMENT_DIM, SPACE_DIM > *pModifier)

template<class Archive >
void	SaveCardiacCells (Archive &archive, const unsigned int version) const

template<class Archive >
void	LoadCardiacCells (Archive &archive, const unsigned int version)

Private Member Functions
template<class Archive >
void	serialize (Archive &archive, const unsigned int version)

Friends
class	TestMonodomainTissue

class	boost::serialization::access

Additional Inherited Members
Protected Member Functions inherited from AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
void	CalculateHaloNodesFromNodeExchange ()

void	SetUpHaloCells (AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM > *pCellFactory)

Protected Attributes inherited from AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *	mpMesh

AbstractConductivityTensors< ELEMENT_DIM, SPACE_DIM > *	mpIntracellularConductivityTensors

std::vector< AbstractCardiacCellInterface * >	mCellsDistributed

std::vector< AbstractCardiacCellInterface * >	mPurkinjeCellsDistributed

ReplicatableVector	mIionicCacheReplicated

ReplicatableVector	mPurkinjeIionicCacheReplicated

ReplicatableVector	mIntracellularStimulusCacheReplicated

ReplicatableVector	mPurkinjeIntracellularStimulusCacheReplicated

HeartConfig *	mpConfig

DistributedVectorFactory *	mpDistributedVectorFactory

std::string	mFibreFilePathNoExtension

AbstractConductivityModifier< ELEMENT_DIM, SPACE_DIM > *	mpConductivityModifier

bool	mHasPurkinje

bool	mDoCacheReplication

bool	mMeshUnarchived

bool	mExchangeHalos

std::vector< unsigned >	mHaloNodes

std::vector< AbstractCardiacCellInterface * >	mHaloCellsDistributed

std::map< unsigned, unsigned >	mHaloGlobalToLocalIndexMap

std::vector< std::vector< unsigned > >	mNodesToSendPerProcess

std::vector< std::vector< unsigned > >	mNodesToReceivePerProcess

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class MonodomainTissue< ELEMENT_DIM, SPACE_DIM >

MonodomainTissue class.

Essentially identical to AbstractCardiacTissue - see documentation for AbstractCardiacTissue.

Template Parameters

ELEMENT_DIM	Dimension of the elements.
SPACE_DIM	Dimension of the space. If not specified, it defaults to ELEMENT_DIM.

Definition at line 62 of file MonodomainTissue.hpp.

Constructor & Destructor Documentation

◆ MonodomainTissue() [1/2]

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

MonodomainTissue< ELEMENT_DIM, SPACE_DIM >::MonodomainTissue	(	AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM > *	pCellFactory,
		bool	exchangeHalos = `false`
	)

Constructor

Parameters

pCellFactory	Provides the mesh and cells
exchangeHalos	used in state-variable interpolation. Defaults to false.

Definition at line 39 of file MonodomainTissue.cpp.

◆ MonodomainTissue() [2/2]

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

MonodomainTissue< ELEMENT_DIM, SPACE_DIM >::MonodomainTissue ( AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > * pMesh )

Another constructor (for archiving)

Parameters

pMesh the mesh (recovered from archive)

Definition at line 47 of file MonodomainTissue.cpp.

Member Function Documentation

◆ serialize()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

template<class Archive >

void MonodomainTissue< ELEMENT_DIM, SPACE_DIM >::serialize	(	Archive &	archive,
		const unsigned int	version
	)

inlineprivate

Archive the member variables.

Parameters

archive
version

Definition at line 76 of file MonodomainTissue.hpp.

Friends And Related Symbol Documentation

◆ boost::serialization::access

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

friend class boost::serialization::access

friend

Needed for serialization.

Definition at line 68 of file MonodomainTissue.hpp.

◆ TestMonodomainTissue

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

friend class TestMonodomainTissue

friend

Definition at line 65 of file MonodomainTissue.hpp.

The documentation for this class was generated from the following files:

heart/src/tissue/MonodomainTissue.hpp
heart/src/tissue/MonodomainTissue.cpp

Public Member Functions

Private Member Functions

Friends

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ MonodomainTissue() [1/2]

◆ MonodomainTissue() [2/2]

Member Function Documentation

◆ serialize()

Friends And Related Symbol Documentation

◆ boost::serialization::access

◆ TestMonodomainTissue