#include <CellwiseOdeSystemInformation.hpp>

Inheritance diagram for CellwiseOdeSystemInformation< ODE_SYSTEM >:

Collaboration diagram for CellwiseOdeSystemInformation< ODE_SYSTEM >:

Public Member Functions
	CellwiseOdeSystemInformation ()

Public Member Functions inherited from AbstractOdeSystemInformation
	AbstractOdeSystemInformation ()

virtual	~AbstractOdeSystemInformation ()

std::string	GetSystemName () const

std::string	GetFreeVariableName () const

std::string	GetFreeVariableUnits () const

void	SetDefaultInitialConditions (const std::vector< double > &rInitialConditions)

void	SetDefaultInitialCondition (unsigned index, double initialCondition)

std::vector< double >	GetInitialConditions () const

const std::vector< std::string > &	rGetStateVariableNames () const

const std::vector< std::string > &	rGetStateVariableUnits () const

unsigned	GetStateVariableIndex (const std::string &rName) const

bool	HasStateVariable (const std::string &rName) const

std::string	GetStateVariableUnits (unsigned index) const

const std::vector< std::string > &	rGetParameterNames () const

const std::vector< std::string > &	rGetParameterUnits () const

unsigned	GetParameterIndex (const std::string &rName) const

bool	HasParameter (const std::string &rName) const

std::string	GetParameterUnits (unsigned index) const

unsigned	GetNumberOfParameters () const

unsigned	GetAnyVariableIndex (const std::string &rName) const

bool	HasAnyVariable (const std::string &rName) const

std::string	GetAnyVariableUnits (unsigned index) const

const std::vector< std::string > &	rGetDerivedQuantityNames () const

const std::vector< std::string > &	rGetDerivedQuantityUnits () const

unsigned	GetDerivedQuantityIndex (const std::string &rName) const

bool	HasDerivedQuantity (const std::string &rName) const

std::string	GetDerivedQuantityUnits (unsigned index) const

unsigned	GetNumberOfDerivedQuantities () const

unsigned	GetNumberOfAttributes () const

bool	HasAttribute (const std::string &rName) const

double	GetAttribute (const std::string &rName) const

Protected Member Functions
void	Initialise ()

void	Initialise ()

void	Initialise ()

void	Initialise ()

void	Initialise ()

void	Initialise ()

void	Initialise ()

void	Initialise ()

void	Initialise ()

Additional Inherited Members
Protected Attributes inherited from AbstractOdeSystemInformation
std::string	mSystemName

std::string	mFreeVariableName

std::string	mFreeVariableUnits

std::vector< std::string >	mVariableNames

std::vector< std::string >	mVariableUnits

std::vector< std::string >	mParameterNames

std::vector< std::string >	mParameterUnits

std::vector< std::string >	mDerivedQuantityNames

std::vector< std::string >	mDerivedQuantityUnits

std::map< std::string, double >	mAttributes

std::vector< double >	mInitialConditions

bool	mInitialised

Detailed Description

template<class ODE_SYSTEM>
class CellwiseOdeSystemInformation< ODE_SYSTEM >

Concrete implementation of AbstractOdeSystemInformation designed for use where some of the system information *can* vary across instances. As with OdeSystemInformation it is templated by ODE system class, to aid developers of ODE system classes - only a specialisation of the Initialise method is required.

Note: unexpected behaviour can occur if ODE system objects are copied (via copy constructor or operator=). The AbstractOdeSystem maintains a smart pointer (boost::shared_ptr) to the system information object. Hence both the original and the copy will share the same information object.

Definition at line 53 of file CellwiseOdeSystemInformation.hpp.

Constructor & Destructor Documentation

◆ CellwiseOdeSystemInformation()

template<class ODE_SYSTEM >

CellwiseOdeSystemInformation< ODE_SYSTEM >::CellwiseOdeSystemInformation ( )

Default constructor; calls Initialise.

Designed to be used as follows by ODE system classes in their constructors: mpSystemInfo.reset(new CellwiseOdeSystemInformation<CLASS>);

Definition at line 86 of file CellwiseOdeSystemInformation.hpp.

References CellwiseOdeSystemInformation< ODE_SYSTEM >::Initialise().

Member Function Documentation

◆ Initialise() [1/9]

void CellwiseOdeSystemInformation< Alarcon2004OxygenBasedCellCycleOdeSystem >::Initialise ( )

protectedvirtual

Initialise the ODE system information.

This must be provided by subclasses.

Implements AbstractOdeSystemInformation.

Definition at line 164 of file Alarcon2004OxygenBasedCellCycleOdeSystem.cpp.

◆ Initialise() [2/9]

template<class ODE_SYSTEM >

void CellwiseOdeSystemInformation< ODE_SYSTEM >::Initialise ( void )

protectedvirtual

Generic implementation of Initialise, which does nothing.

Developers should specialise this method to their ODE system. For example,

template<> void CellwiseOdeSystemInformation<MyNewOdeSystem>::Initialise() { this->mVariableNames.push_back("Variable_1"); this->mVariableUnits.push_back("Units_1"); this->mInitialConditions.push_back(0.0);

this->mInitialised = true; }

Implements AbstractOdeSystemInformation.

Definition at line 92 of file CellwiseOdeSystemInformation.hpp.

Referenced by CellwiseOdeSystemInformation< ODE_SYSTEM >::CellwiseOdeSystemInformation().