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Chaste Commit::333233612e3dcc941d260418acd7b5ccdc30390e
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#include <VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp>
Public Member Functions | |
VanLeeuwen2009WntSwatCellCycleOdeSystem (unsigned hypothesis, double wntLevel=0.0, boost::shared_ptr< AbstractCellMutationState > pMutationState=boost::shared_ptr< AbstractCellMutationState >(), std::vector< double > stateVariables=std::vector< double >()) | |
~VanLeeuwen2009WntSwatCellCycleOdeSystem () | |
void | Init () |
void | SetMutationState (boost::shared_ptr< AbstractCellMutationState > pMutationState) |
const boost::shared_ptr< AbstractCellMutationState > | GetMutationState () const |
void | EvaluateYDerivatives (double time, const std::vector< double > &rY, std::vector< double > &rDY) |
bool | CalculateStoppingEvent (double time, const std::vector< double > &rY) |
double | CalculateRootFunction (double time, const std::vector< double > &rY) |
double | GetWntLevel () const |
unsigned | GetHypothesis () const |
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AbstractOdeSystem (unsigned numberOfStateVariables) | |
virtual | ~AbstractOdeSystem () |
bool | GetUseAnalyticJacobian () |
const std::vector< double > & | rGetConstStateVariables () const |
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AbstractParameterisedSystem (unsigned numberOfStateVariables) | |
std::vector< double > & | rGetStateVariables () |
std::vector< double > | GetStateVariables () |
void | SetStateVariables (const std::vector< double > &rStateVariables) |
double | GetStateVariable (unsigned index) const |
double | GetStateVariable (const std::string &rName) const |
void | SetStateVariable (unsigned index, double newValue) |
void | SetStateVariable (const std::string &rName, double newValue) |
virtual void | VerifyStateVariables () |
void | SetDefaultInitialConditions (const std::vector< double > &rInitialConditions) |
void | SetDefaultInitialCondition (unsigned index, double initialCondition) |
std::vector< double > | GetInitialConditions () const |
void | ResetToInitialConditions () |
double | GetParameter (unsigned index) const |
double | GetParameter (const std::string &rName) const |
void | SetParameter (const std::string &rName, double value) |
void | SetParameter (unsigned index, double value) |
double | GetAnyVariable (unsigned index, double time=0.0, std::vector< double > *pDerivedQuantities=NULL) |
double | GetAnyVariable (const std::string &rName, double time=0.0, std::vector< double > *pDerivedQuantities=NULL) |
void | SetAnyVariable (unsigned index, double value) |
void | SetAnyVariable (const std::string &rName, double value) |
virtual std::vector< double > | ComputeDerivedQuantities (double time, const std::vector< double > &rState) |
std::vector< double > | ComputeDerivedQuantitiesFromCurrentState (double time) |
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AbstractUntemplatedParameterisedSystem (unsigned numberOfStateVariables) | |
virtual | ~AbstractUntemplatedParameterisedSystem () |
boost::shared_ptr< const AbstractOdeSystemInformation > | GetSystemInformation () const |
std::string | GetSystemName () const |
unsigned | GetNumberOfAttributes () const |
bool | HasAttribute (const std::string &rName) const |
double | GetAttribute (const std::string &rName) const |
unsigned | GetNumberOfStateVariables () const |
const std::vector< std::string > & | rGetStateVariableNames () const |
const std::vector< std::string > & | rGetStateVariableUnits () const |
unsigned | GetStateVariableIndex (const std::string &rName) const |
bool | HasStateVariable (const std::string &rName) const |
std::string | GetStateVariableUnits (unsigned index) const |
unsigned | GetNumberOfParameters () const |
const std::vector< std::string > & | rGetParameterNames () const |
const std::vector< std::string > & | rGetParameterUnits () const |
unsigned | GetParameterIndex (const std::string &rName) const |
bool | HasParameter (const std::string &rName) const |
std::string | GetParameterUnits (unsigned index) const |
unsigned | GetNumberOfDerivedQuantities () const |
const std::vector< std::string > & | rGetDerivedQuantityNames () const |
const std::vector< std::string > & | rGetDerivedQuantityUnits () const |
unsigned | GetDerivedQuantityIndex (const std::string &rName) const |
bool | HasDerivedQuantity (const std::string &rName) const |
std::string | GetDerivedQuantityUnits (unsigned index) const |
unsigned | GetAnyVariableIndex (const std::string &rName) const |
bool | HasAnyVariable (const std::string &rName) const |
std::string | GetAnyVariableUnits (unsigned index) const |
std::string | GetAnyVariableUnits (const std::string &rName) const |
Private Member Functions | |
template<class Archive > | |
void | serialize (Archive &archive, const unsigned int version) |
Private Attributes | |
double | mk2d |
double | mk3d |
double | mk34d |
double | mk43d |
double | mk23d |
double | mad |
double | mJ11d |
double | mJ12d |
double | mJ13d |
double | mJ61d |
double | mJ62d |
double | mJ63d |
double | mKm1d |
double | mkpd |
double | mphi_r |
double | mphi_i |
double | mphi_j |
double | mphi_p |
double | mk16d |
double | mk61d |
double | mPhiE2F1 |
double | mSa |
double | mSca |
double | mSc |
double | mSct |
double | mSd |
double | mSt |
double | mSx |
double | mSy |
double | mDa |
double | mDca |
double | mDc |
double | mDct |
double | mDd |
double | mDdx |
double | mDt |
double | mDu |
double | mDx |
double | mDy |
double | mKc |
double | mKd |
double | mKt |
double | mPc |
double | mPu |
double | mXiD |
double | mXiDx |
double | mXiX |
double | mXiC |
boost::shared_ptr< AbstractCellMutationState > | mpMutationState |
unsigned | mHypothesis |
double | mWntLevel |
Friends | |
class | boost::serialization::access |
Additional Inherited Members | |
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std::string | DumpState (const std::string &rMessage) |
std::string | DumpState (const std::string &rMessage, std::vector< double > Y) |
std::string | DumpState (const std::string &rMessage, std::vector< double > Y, double time) |
void | CheckParametersOnLoad (const std::vector< double > &rParameters, const std::vector< std::string > &rParameterNames) |
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bool | mUseAnalyticJacobian |
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std::vector< double > | mStateVariables |
std::vector< double > | mParameters |
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unsigned | mNumberOfStateVariables |
boost::shared_ptr< AbstractOdeSystemInformation > | mpSystemInfo |
Represents the van Leeuwen et al. (2007) system of ODEs [doi:10.1016/j.jtbi.2007.01.019] coupled to the Swat et al. cell-cycle model equations. [doi:10.1093/bioinformatics/bth110]
The variables are
0. r = pRb 1. e = E2F1 (This is the S-phase indicator) 2. i = CycD (inactive) 3. j = CycD (active) 4. p = pRb-p 5. D = APC destruction complex 6. X = Axin 7. Cu = Beta Cat marked for ubiquitination 8. Co = Open form Beta Cat 9. Cc = Closed form Beta Cat 10. Mo = Open form Mutant Beta Cat 11. Mc = Closed form Mutant Beta Cat 12. A = Free Adhesion molecules 13. Ca = BetaCat/Adhesion 14. Ma = Mutant BetaCat/Adhesion 15. T = free TCF 16. Cot = Open BetaCat/TCF 17. Cct = Closed BetaCat/TCF 18. Mot = Open Mutant BetaCat/TCF 19. Mct = Closed Mutant BetaCat/TCF 20. Y = Wnt Target protein 21. Wnt level
Definition at line 81 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
VanLeeuwen2009WntSwatCellCycleOdeSystem::VanLeeuwen2009WntSwatCellCycleOdeSystem | ( | unsigned | hypothesis, |
double | wntLevel = 0.0 , |
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boost::shared_ptr< AbstractCellMutationState > | pMutationState = boost::shared_ptr<AbstractCellMutationState>() , |
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std::vector< double > | stateVariables = std::vector<double>() |
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Constructor.
hypothesis | takes the value 1 or 2 and affects the ODE system. |
wntLevel | is a non-dimensional Wnt value between 0 and 1. This sets up the Wnt pathway in its steady state. |
pMutationState | cell mutation; some affect the ODE system |
stateVariables | optional initial conditions for state variables (only used in archiving) |
State variables are
0. r = pRb 1. e = E2F1 (This is the S-phase indicator) 2. i = CycD (inactive) 3. j = CycD (active) 4. p = pRb-p 5. D = APC destruction complex 6. X = Axin 7. Cu = Beta Cat marked for ubiquitination 8. Co = Open form Beta Cat 9. Cc = Closed form Beta Cat 10. Mo = Open form Mutant Beta Cat 11. Mc = Closed form Mutant Beta Cat 12. A = Free Adhesion molecules 13. Ca = BetaCat/Adhesion 14. Ma = Mutant BetaCat/Adhesion 15. T = free TCF 16. Cot = Open BetaCat/TCF 17. Cct = Closed BetaCat/TCF 18. Mot = Open Mutant BetaCat/TCF 19. Mct = Closed Mutant BetaCat/TCF 20. Y = Wnt Target protein 21. Wnt level
Definition at line 42 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.cpp.
References EXCEPTION, Init(), mDa, mDc, mDca, mDct, mDd, mDdx, mDt, mDu, mDx, mDy, mKc, mKd, mKt, mPc, mpMutationState, AbstractUntemplatedParameterisedSystem::mpSystemInfo, mPu, mSa, mSc, mSca, mSct, mSd, mSt, mSx, mSy, mXiC, mXiD, mXiDx, mXiX, AbstractParameterisedSystem< std::vector< double > >::SetDefaultInitialCondition(), and AbstractParameterisedSystem< std::vector< double > >::SetStateVariables().
VanLeeuwen2009WntSwatCellCycleOdeSystem::~VanLeeuwen2009WntSwatCellCycleOdeSystem | ( | ) |
Destructor.
Definition at line 162 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.cpp.
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When using CVODE this function is called instead of CalculateStoppingEvent. It allows the point at which rY[1] reaches 1 to be found to greater precision.
time | at which to calculate whether the stopping event has occurred |
rY | value of the solution vector used to evaluate the RHS |
Reimplemented from AbstractOdeSystem.
Definition at line 386 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.cpp.
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Calculate whether the conditions for the cell cycle to finish have been met.
time | at which to calculate whether the stopping event has occurred |
rY | value of the solution vector used to evaluate the RHS |
Reimplemented from AbstractOdeSystem.
Definition at line 378 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.cpp.
References EvaluateYDerivatives().
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Compute the RHS of the system of ODEs.
Returns a vector representing the RHS of the ODEs at each time step, y' = [y1' ... yn']. An ODE solver will call this function repeatedly to solve for y = [y1 ... yn].
time | used to evaluate the RHS. |
rY | value of the solution vector used to evaluate the RHS. |
rDY | filled in with the resulting derivatives (using van Leeuwen et al. (2007) system of equations) |
Implements AbstractOdeSystem.
Definition at line 258 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.cpp.
References mad, mDa, mDc, mDca, mDct, mDd, mDdx, mDt, mDu, mDx, mDy, mJ11d, mJ12d, mJ13d, mJ61d, mJ62d, mJ63d, mk16d, mk23d, mk2d, mk34d, mk3d, mk43d, mk61d, mKc, mKd, mKm1d, mkpd, mKt, mPc, mphi_i, mphi_j, mphi_p, mphi_r, mPhiE2F1, mpMutationState, mPu, mSa, mSc, mSca, mSct, mSd, mSt, mSx, mSy, mXiC, mXiD, mXiDx, and mXiX.
Referenced by CalculateStoppingEvent().
unsigned VanLeeuwen2009WntSwatCellCycleOdeSystem::GetHypothesis | ( | ) | const |
Definition at line 490 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.cpp.
References mHypothesis.
const boost::shared_ptr< AbstractCellMutationState > VanLeeuwen2009WntSwatCellCycleOdeSystem::GetMutationState | ( | ) | const |
Called by the archive function on the Wnt cell-cycle model.
Definition at line 373 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.cpp.
References mpMutationState.
double VanLeeuwen2009WntSwatCellCycleOdeSystem::GetWntLevel | ( | ) | const |
Definition at line 485 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.cpp.
References mWntLevel.
void VanLeeuwen2009WntSwatCellCycleOdeSystem::Init | ( | ) |
Initialise parameter values.
Definition at line 167 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.cpp.
References mad, mDa, mDc, mDca, mDct, mDd, mDdx, mDt, mDu, mDx, mDy, mHypothesis, mJ11d, mJ12d, mJ13d, mJ61d, mJ62d, mJ63d, mk16d, mk23d, mk2d, mk34d, mk3d, mk43d, mk61d, mKc, mKd, mKm1d, mkpd, mKt, mPc, mphi_i, mphi_j, mphi_p, mphi_r, mPhiE2F1, mPu, mSa, mSc, mSca, mSct, mSd, mSt, mSx, mSy, mXiC, mXiD, mXiDx, and mXiX.
Referenced by VanLeeuwen2009WntSwatCellCycleOdeSystem().
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Serialize the object and its member variables.
archive | the archive |
version | the current version of this class |
Definition at line 212 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
void VanLeeuwen2009WntSwatCellCycleOdeSystem::SetMutationState | ( | boost::shared_ptr< AbstractCellMutationState > | pMutationState | ) |
Set the mutation state of the cell.
This should be called by the relevant cell-cycle model before any solving of the ODE system (as it is used to evaluate the Y derivatives).
pMutationState | the mutation state. |
Definition at line 157 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.cpp.
References mpMutationState.
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Definition at line 204 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
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Dimensional parameter a.
Definition at line 100 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by EvaluateYDerivatives(), and Init().
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Dimensionless parameter d_A.
Definition at line 153 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by VanLeeuwen2009WntSwatCellCycleOdeSystem(), EvaluateYDerivatives(), and Init().
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Dimensionless parameter d_C.
Definition at line 157 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by VanLeeuwen2009WntSwatCellCycleOdeSystem(), EvaluateYDerivatives(), and Init().
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Dimensionless parameter d_CA.
Definition at line 155 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by VanLeeuwen2009WntSwatCellCycleOdeSystem(), EvaluateYDerivatives(), and Init().
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Dimensionless parameter d_CT.
Definition at line 159 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by VanLeeuwen2009WntSwatCellCycleOdeSystem(), EvaluateYDerivatives(), and Init().
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Dimensionless parameter d_D.
Definition at line 161 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by VanLeeuwen2009WntSwatCellCycleOdeSystem(), EvaluateYDerivatives(), and Init().
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Dimensionless parameter d_Dx.
Definition at line 163 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by VanLeeuwen2009WntSwatCellCycleOdeSystem(), EvaluateYDerivatives(), and Init().
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Dimensionless parameter d_T.
Definition at line 165 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by VanLeeuwen2009WntSwatCellCycleOdeSystem(), EvaluateYDerivatives(), and Init().
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Dimensionless parameter d_U.
Definition at line 167 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by VanLeeuwen2009WntSwatCellCycleOdeSystem(), EvaluateYDerivatives(), and Init().
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Dimensionless parameter d_X.
Definition at line 169 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by VanLeeuwen2009WntSwatCellCycleOdeSystem(), EvaluateYDerivatives(), and Init().
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Dimensionless parameter d_Y.
Definition at line 171 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by VanLeeuwen2009WntSwatCellCycleOdeSystem(), EvaluateYDerivatives(), and Init().
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The hypothesis we are using = 1u for Van Leeuwen Hypothesis I = 2u for Van Leeuwen Hypothesis II
Definition at line 199 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by GetHypothesis(), and Init().
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Dimensional parameter J_11.
Definition at line 102 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by EvaluateYDerivatives(), and Init().
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Dimensional parameter J_12.
Definition at line 104 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by EvaluateYDerivatives(), and Init().
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Dimensional parameter J_13.
Definition at line 106 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by EvaluateYDerivatives(), and Init().
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Dimensional parameter J_13.
Definition at line 108 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by EvaluateYDerivatives(), and Init().
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Dimensional parameter J_62.
Definition at line 110 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by EvaluateYDerivatives(), and Init().
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Dimensional parameter J_63.
Definition at line 112 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by EvaluateYDerivatives(), and Init().
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Dimensional parameter k_16.
Definition at line 126 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by EvaluateYDerivatives(), and Init().
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Dimensional parameter k_23.
Definition at line 98 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by EvaluateYDerivatives(), and Init().
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Parameters for the Swat et al. (2004) model Dimensional parameter k_2.
Definition at line 90 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by EvaluateYDerivatives(), and Init().
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Dimensional parameter k_34.
Definition at line 94 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by EvaluateYDerivatives(), and Init().
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Dimensional parameter k_3.
Definition at line 92 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by EvaluateYDerivatives(), and Init().
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Dimensional parameter k_2.
Definition at line 96 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by EvaluateYDerivatives(), and Init().
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Dimensional parameter k_61.
Definition at line 128 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by EvaluateYDerivatives(), and Init().
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Dimensionless parameter K_c.
Definition at line 173 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by VanLeeuwen2009WntSwatCellCycleOdeSystem(), EvaluateYDerivatives(), and Init().
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Dimensionless parameter K_D.
Definition at line 175 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by VanLeeuwen2009WntSwatCellCycleOdeSystem(), EvaluateYDerivatives(), and Init().
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Dimensional parameter K_m1.
Definition at line 114 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by EvaluateYDerivatives(), and Init().
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Dimensional parameter k_p.
Definition at line 116 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by EvaluateYDerivatives(), and Init().
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Dimensionless parameter K_T.
Definition at line 177 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by VanLeeuwen2009WntSwatCellCycleOdeSystem(), EvaluateYDerivatives(), and Init().
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Dimensionless parameter p_c.
Definition at line 179 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by VanLeeuwen2009WntSwatCellCycleOdeSystem(), EvaluateYDerivatives(), and Init().
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Dimensionless parameter phi_i.
Definition at line 120 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by EvaluateYDerivatives(), and Init().
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Dimensionless parameter phi_j.
Definition at line 122 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by EvaluateYDerivatives(), and Init().
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Dimensionless parameter phi_p.
Definition at line 124 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by EvaluateYDerivatives(), and Init().
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Dimensionless parameter phi_r.
Definition at line 118 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by EvaluateYDerivatives(), and Init().
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Dimensionless parameter phi_E2F1.
Definition at line 130 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by EvaluateYDerivatives(), and Init().
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The mutation state of the cell.
Definition at line 192 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by VanLeeuwen2009WntSwatCellCycleOdeSystem(), EvaluateYDerivatives(), GetMutationState(), and SetMutationState().
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Dimensionless parameter p_u.
Definition at line 181 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by VanLeeuwen2009WntSwatCellCycleOdeSystem(), EvaluateYDerivatives(), and Init().
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Parameters for the Van Leeuwen et al. (2007) model Dimensionless parameter s_A.
Definition at line 137 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by VanLeeuwen2009WntSwatCellCycleOdeSystem(), EvaluateYDerivatives(), and Init().
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Dimensionless parameter s_C.
Definition at line 141 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by VanLeeuwen2009WntSwatCellCycleOdeSystem(), EvaluateYDerivatives(), and Init().
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Dimensionless parameter s_CA.
Definition at line 139 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by VanLeeuwen2009WntSwatCellCycleOdeSystem(), EvaluateYDerivatives(), and Init().
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Dimensionless parameter s_CT.
Definition at line 143 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by VanLeeuwen2009WntSwatCellCycleOdeSystem(), EvaluateYDerivatives(), and Init().
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Dimensionless parameter s_D.
Definition at line 145 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by VanLeeuwen2009WntSwatCellCycleOdeSystem(), EvaluateYDerivatives(), and Init().
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Dimensionless parameter s_T.
Definition at line 147 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by VanLeeuwen2009WntSwatCellCycleOdeSystem(), EvaluateYDerivatives(), and Init().
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Dimensionless parameter s_X.
Definition at line 149 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by VanLeeuwen2009WntSwatCellCycleOdeSystem(), EvaluateYDerivatives(), and Init().
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Dimensionless parameter s_Y.
Definition at line 151 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by VanLeeuwen2009WntSwatCellCycleOdeSystem(), EvaluateYDerivatives(), and Init().
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The Wnt level (this affects the ODE system).
Definition at line 202 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by GetWntLevel().
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Dimensionless parameter xi_C.
Definition at line 189 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by VanLeeuwen2009WntSwatCellCycleOdeSystem(), EvaluateYDerivatives(), and Init().
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Dimensionless parameter xi_D.
Definition at line 183 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by VanLeeuwen2009WntSwatCellCycleOdeSystem(), EvaluateYDerivatives(), and Init().
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Dimensionless parameter xi_Dx.
Definition at line 185 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by VanLeeuwen2009WntSwatCellCycleOdeSystem(), EvaluateYDerivatives(), and Init().
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Dimensionless parameter xi_X.
Definition at line 187 of file VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp.
Referenced by VanLeeuwen2009WntSwatCellCycleOdeSystem(), EvaluateYDerivatives(), and Init().