| AbstractOdeSystem(unsigned numberOfStateVariables) | AbstractOdeSystem | |
| AbstractParameterisedSystem(unsigned numberOfStateVariables) | AbstractParameterisedSystem< std::vector< double > > | |
| AbstractUntemplatedParameterisedSystem(unsigned numberOfStateVariables) | AbstractUntemplatedParameterisedSystem | |
| boost::serialization::access (defined in VanLeeuwen2009WntSwatCellCycleOdeSystem) | VanLeeuwen2009WntSwatCellCycleOdeSystem | friend |
| CalculateRootFunction(double time, const std::vector< double > &rY) | VanLeeuwen2009WntSwatCellCycleOdeSystem | virtual |
| CalculateStoppingEvent(double time, const std::vector< double > &rY) | VanLeeuwen2009WntSwatCellCycleOdeSystem | virtual |
| CheckParametersOnLoad(const std::vector< double > &rParameters, const std::vector< std::string > &rParameterNames) | AbstractParameterisedSystem< std::vector< double > > | protected |
| ComputeDerivedQuantities(double time, const std::vector< double > &rState) | AbstractParameterisedSystem< std::vector< double > > | virtual |
| ComputeDerivedQuantitiesFromCurrentState(double time) | AbstractParameterisedSystem< std::vector< double > > | |
| DumpState(const std::string &rMessage) | AbstractParameterisedSystem< std::vector< double > > | protected |
| DumpState(const std::string &rMessage, std::vector< double > Y) | AbstractParameterisedSystem< std::vector< double > > | protected |
| DumpState(const std::string &rMessage, std::vector< double > Y, double time) | AbstractParameterisedSystem< std::vector< double > > | protected |
| EvaluateYDerivatives(double time, const std::vector< double > &rY, std::vector< double > &rDY) | VanLeeuwen2009WntSwatCellCycleOdeSystem | virtual |
| GetAnyVariable(unsigned index, double time=0.0, std::vector< double > *pDerivedQuantities=NULL) | AbstractParameterisedSystem< std::vector< double > > | |
| GetAnyVariable(const std::string &rName, double time=0.0, std::vector< double > *pDerivedQuantities=NULL) | AbstractParameterisedSystem< std::vector< double > > | |
| GetAnyVariableIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| GetAnyVariableUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
| GetAnyVariableUnits(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| GetAttribute(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| GetDerivedQuantityIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| GetDerivedQuantityUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
| GetHypothesis() const | VanLeeuwen2009WntSwatCellCycleOdeSystem | |
| GetInitialConditions() const | AbstractParameterisedSystem< std::vector< double > > | |
| GetMutationState() const | VanLeeuwen2009WntSwatCellCycleOdeSystem | |
| GetNumberOfAttributes() const | AbstractUntemplatedParameterisedSystem | |
| GetNumberOfDerivedQuantities() const | AbstractUntemplatedParameterisedSystem | |
| GetNumberOfParameters() const | AbstractUntemplatedParameterisedSystem | |
| GetNumberOfStateVariables() const | AbstractUntemplatedParameterisedSystem | |
| GetParameter(unsigned index) const | AbstractParameterisedSystem< std::vector< double > > | |
| GetParameter(const std::string &rName) const | AbstractParameterisedSystem< std::vector< double > > | |
| GetParameterIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| GetParameterUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
| GetStateMessage(const std::string &rMessage, std::vector< double > Y) | AbstractParameterisedSystem< std::vector< double > > | private |
| GetStateVariable(unsigned index) const | AbstractParameterisedSystem< std::vector< double > > | |
| GetStateVariable(const std::string &rName) const | AbstractParameterisedSystem< std::vector< double > > | |
| GetStateVariableIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| GetStateVariables() | AbstractParameterisedSystem< std::vector< double > > | |
| GetStateVariableUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
| GetSystemInformation() const | AbstractUntemplatedParameterisedSystem | |
| GetSystemName() const | AbstractUntemplatedParameterisedSystem | |
| GetUseAnalyticJacobian() | AbstractOdeSystem | |
| GetWntLevel() const | VanLeeuwen2009WntSwatCellCycleOdeSystem | |
| HasAnyVariable(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| HasAttribute(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| HasDerivedQuantity(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| HasParameter(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| HasStateVariable(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
| Init() | VanLeeuwen2009WntSwatCellCycleOdeSystem | |
| load(Archive &archive, const unsigned int version) | AbstractOdeSystem | inlineprivate |
| mad | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mDa | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mDc | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mDca | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mDct | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mDd | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mDdx | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mDt | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mDu | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mDx | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mDy | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mHypothesis | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mJ11d | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mJ12d | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mJ13d | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mJ61d | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mJ62d | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mJ63d | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mk16d | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mk23d | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mk2d | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mk34d | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mk3d | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mk43d | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mk61d | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mKc | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mKd | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mKm1d | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mkpd | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mKt | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mNumberOfStateVariables | AbstractUntemplatedParameterisedSystem | protected |
| mParameters | AbstractParameterisedSystem< std::vector< double > > | protected |
| mPc | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mphi_i | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mphi_j | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mphi_p | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mphi_r | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mPhiE2F1 | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mpMutationState | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mpSystemInfo | AbstractUntemplatedParameterisedSystem | protected |
| mPu | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mSa | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mSc | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mSca | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mSct | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mSd | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mSt | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mStateVariables | AbstractParameterisedSystem< std::vector< double > > | protected |
| mSx | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mSy | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mUseAnalyticJacobian | AbstractOdeSystem | protected |
| mWntLevel | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mXiC | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mXiD | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mXiDx | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| mXiX | VanLeeuwen2009WntSwatCellCycleOdeSystem | private |
| ResetToInitialConditions() | AbstractParameterisedSystem< std::vector< double > > | virtual |
| rGetConstStateVariables() const | AbstractOdeSystem | |
| rGetDerivedQuantityNames() const | AbstractUntemplatedParameterisedSystem | |
| rGetDerivedQuantityUnits() const | AbstractUntemplatedParameterisedSystem | |
| rGetParameterNames() const | AbstractUntemplatedParameterisedSystem | |
| rGetParameterUnits() const | AbstractUntemplatedParameterisedSystem | |
| rGetStateVariableNames() const | AbstractUntemplatedParameterisedSystem | |
| rGetStateVariables() | AbstractParameterisedSystem< std::vector< double > > | |
| rGetStateVariableUnits() const | AbstractUntemplatedParameterisedSystem | |
| save(Archive &archive, const unsigned int version) const | AbstractOdeSystem | inlineprivate |
| serialize(Archive &archive, const unsigned int version) | VanLeeuwen2009WntSwatCellCycleOdeSystem | inlineprivate |
| SetAnyVariable(unsigned index, double value) | AbstractParameterisedSystem< std::vector< double > > | |
| SetAnyVariable(const std::string &rName, double value) | AbstractParameterisedSystem< std::vector< double > > | |
| SetDefaultInitialCondition(unsigned index, double initialCondition) | AbstractParameterisedSystem< std::vector< double > > | |
| SetDefaultInitialConditions(const std::vector< double > &rInitialConditions) | AbstractParameterisedSystem< std::vector< double > > | |
| SetMutationState(boost::shared_ptr< AbstractCellMutationState > pMutationState) | VanLeeuwen2009WntSwatCellCycleOdeSystem | |
| SetParameter(const std::string &rName, double value) | AbstractParameterisedSystem< std::vector< double > > | |
| SetParameter(unsigned index, double value) | AbstractParameterisedSystem< std::vector< double > > | |
| SetStateVariable(unsigned index, double newValue) | AbstractParameterisedSystem< std::vector< double > > | |
| SetStateVariable(const std::string &rName, double newValue) | AbstractParameterisedSystem< std::vector< double > > | |
| SetStateVariables(const std::vector< double > &rStateVariables) | AbstractParameterisedSystem< std::vector< double > > | |
| VanLeeuwen2009WntSwatCellCycleOdeSystem(unsigned hypothesis, double wntLevel=0.0, boost::shared_ptr< AbstractCellMutationState > pMutationState=boost::shared_ptr< AbstractCellMutationState >(), std::vector< double > stateVariables=std::vector< double >()) | VanLeeuwen2009WntSwatCellCycleOdeSystem | |
| VerifyStateVariables() | AbstractParameterisedSystem< std::vector< double > > | inlinevirtual |
| ~AbstractOdeSystem() | AbstractOdeSystem | virtual |
| ~AbstractUntemplatedParameterisedSystem() | AbstractUntemplatedParameterisedSystem | virtual |
| ~VanLeeuwen2009WntSwatCellCycleOdeSystem() | VanLeeuwen2009WntSwatCellCycleOdeSystem | |
1.9.8