Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
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#include <ExtendedBidomainNeumannSurfaceTermAssembler.hpp>
Protected Member Functions | |
virtual c_vector< double, 3 *ELEMENT_DIM > | ComputeVectorSurfaceTerm (const BoundaryElement< ELEMENT_DIM-1, SPACE_DIM > &rSurfaceElement, c_vector< double, ELEMENT_DIM > &rPhi, ChastePoint< SPACE_DIM > &rX) |
Protected Member Functions inherited from AbstractFeSurfaceIntegralAssembler< ELEMENT_DIM, SPACE_DIM, 3 > | |
virtual void | AssembleOnSurfaceElement (const BoundaryElement< ELEMENT_DIM-1, SPACE_DIM > &rSurfaceElement, c_vector< double, PROBLEM_DIM *ELEMENT_DIM > &rBSurfElem) |
void | DoAssemble () |
Protected Member Functions inherited from AbstractFeAssemblerCommon< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, true, false, NORMAL > | |
virtual double | GetCurrentSolutionOrGuessValue (unsigned nodeIndex, unsigned indexOfUnknown) |
virtual void | ResetInterpolatedQuantities () |
virtual void | IncrementInterpolatedQuantities (double phiI, const Node< SPACE_DIM > *pNode) |
virtual void | IncrementInterpolatedGradientQuantities (const c_matrix< double, SPACE_DIM, ELEMENT_DIM+1 > &rGradPhi, unsigned phiIndex, const Node< SPACE_DIM > *pNode) |
Additional Inherited Members | |
Protected Types inherited from AbstractFeSurfaceIntegralAssembler< ELEMENT_DIM, SPACE_DIM, 3 > | |
typedef LinearBasisFunction< ELEMENT_DIM-1 > | SurfaceBasisFunction |
Protected Attributes inherited from AbstractFeSurfaceIntegralAssembler< ELEMENT_DIM, SPACE_DIM, 3 > | |
AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > * | mpMesh |
BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > * | mpBoundaryConditions |
GaussianQuadratureRule< ELEMENT_DIM-1 > * | mpSurfaceQuadRule |
Protected Attributes inherited from AbstractFeAssemblerCommon< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, true, false, NORMAL > | |
ReplicatableVector | mCurrentSolutionOrGuessReplicated |
Protected Attributes inherited from AbstractFeAssemblerInterface< CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX > | |
Vec | mVectorToAssemble |
Mat | mMatrixToAssemble |
bool | mAssembleMatrix |
bool | mAssembleVector |
bool | mZeroMatrixBeforeAssembly |
bool | mZeroVectorBeforeAssembly |
PetscInt | mOwnershipRangeLo |
PetscInt | mOwnershipRangeHi |
Assembler which sets up the surface integral integrals for the extended bidomain equations, assuming that the boundary conditions are written: div(sigma_i_1 grad phi_i_1) . n = g1, div(sigma_i_2 grad phi_i_2) . n = g2 and div(sigma_e grad phi_e) dot n = g3.
Definition at line 50 of file ExtendedBidomainNeumannSurfaceTermAssembler.hpp.
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inline |
Constructor
pMesh | The mesh |
pBoundaryConditions | The boundary conditions container |
Definition at line 83 of file ExtendedBidomainNeumannSurfaceTermAssembler.hpp.
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protectedvirtual |
This method is called by AssembleOnSurfaceElement() and tells the assembler what to add to the element stiffness matrix arising from surface element contributions.
NOTE: this method has to be implemented but shouldn't ever be called - because all bidomain problems (currently) just have zero Neumann boundary conditions and the AbstractLinearAssmebler::AssembleSystem() method will realise this and not loop over surface elements.
rSurfaceElement | the element which is being considered. |
rPhi | The basis functions, rPhi(i) = phi_i, i=1..numBases |
rX | The point in space |
Reimplemented from AbstractFeSurfaceIntegralAssembler< ELEMENT_DIM, SPACE_DIM, 3 >.
Definition at line 93 of file ExtendedBidomainNeumannSurfaceTermAssembler.hpp.