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Chaste Commit::333233612e3dcc941d260418acd7b5ccdc30390e
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#include <CellProliferativePhasesCountWriter.hpp>
Public Member Functions | |
CellProliferativePhasesCountWriter () | |
void | VisitAnyPopulation (AbstractCellPopulation< SPACE_DIM, SPACE_DIM > *pCellPopulation) |
virtual void | Visit (MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
virtual void | Visit (CaBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
virtual void | Visit (NodeBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
virtual void | Visit (PottsBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
virtual void | Visit (VertexBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
virtual void | Visit (ImmersedBoundaryCellPopulation< SPACE_DIM > *pCellPopulation) |
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AbstractCellPopulationCountWriter (const std::string &rFileName) | |
virtual void | WriteHeader (AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
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AbstractCellBasedWriter (const std::string &rFileName) | |
virtual | ~AbstractCellBasedWriter () |
void | CloseFile () |
virtual void | OpenOutputFile (OutputFileHandler &rOutputFileHandler) |
void | OpenOutputFileForAppend (OutputFileHandler &rOutputFileHandler) |
virtual void | WriteTimeStamp () |
virtual void | WriteNewline () |
void | SetFileName (std::string fileName) |
std::string | GetFileName () |
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virtual | ~Identifiable () |
std::string | GetIdentifier () const |
Private Member Functions | |
template<class Archive > | |
void | serialize (Archive &archive, const unsigned int version) |
Friends | |
class | boost::serialization::access |
Additional Inherited Members | |
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std::string | mFileName |
out_stream | mpOutStream |
A class written using the visitor pattern for writing the number of cells in each proliferative phase to file.
The output file is called cellcyclephases.dat by default.
Definition at line 49 of file CellProliferativePhasesCountWriter.hpp.
CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >::CellProliferativePhasesCountWriter | ( | ) |
Default constructor.
Definition at line 46 of file CellProliferativePhasesCountWriter.cpp.
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inlineprivate |
Serialize the object and its member variables.
archive | the archive |
version | the current version of this class |
Definition at line 61 of file CellProliferativePhasesCountWriter.hpp.
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virtual |
Visit the population and write the number of cells in the population that have each proliferative phase.
Outputs a line of tab-separated values of the form: [num G0 phase] [num G1 phase] [num S phase] [num G2 phase] [num M phase]
where [num G0 phase] denotes the number of cells in the population that are in G0 phase, and so on. These counts are computed through the cell population method GetCellCyclePhaseCount().
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
pCellPopulation | a pointer to the CaBasedCellPopulation to visit. |
Implements AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 80 of file CellProliferativePhasesCountWriter.cpp.
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virtual |
Visit the population and write the data.
Just passes through to VisitAnyPopulation
pCellPopulation | a pointer to the ImmersedBoundaryCellPopulation to visit. |
Implements AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 104 of file CellProliferativePhasesCountWriter.cpp.
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virtual |
Visit the population and write the number of cells in the population that have each proliferative phase.
Outputs a line of tab-separated values of the form: [num G0 phase] [num G1 phase] [num S phase] [num G2 phase] [num M phase]
where [num G0 phase] denotes the number of cells in the population that are in G0 phase, and so on. These counts are computed through the cell population method GetCellCyclePhaseCount().
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
pCellPopulation | a pointer to the MeshBasedCellPopulation to visit. |
Implements AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 66 of file CellProliferativePhasesCountWriter.cpp.
References PetscTools::AmMaster(), and AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetCellCyclePhaseCount().
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virtual |
Visit the population and write the number of cells in the population that have each proliferative phase.
Outputs a line of tab-separated values of the form: [num G0 phase] [num G1 phase] [num S phase] [num G2 phase] [num M phase]
where [num G0 phase] denotes the number of cells in the population that are in G0 phase, and so on. These counts are computed through the cell population method GetCellCyclePhaseCount().
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
pCellPopulation | a pointer to the NodeBasedCellPopulation to visit. |
Implements AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 86 of file CellProliferativePhasesCountWriter.cpp.
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virtual |
Visit the population and write the number of cells in the population that have each proliferative phase.
Outputs a line of tab-separated values of the form: [num G0 phase] [num G1 phase] [num S phase] [num G2 phase] [num M phase]
where [num G0 phase] denotes the number of cells in the population that are in G0 phase, and so on. These counts are computed through the cell population method GetCellCyclePhaseCount().
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
pCellPopulation | a pointer to the PottsBasedCellPopulation to visit. |
Implements AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 92 of file CellProliferativePhasesCountWriter.cpp.
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virtual |
Visit the population and write the number of cells in the population that have each proliferative phase.
Outputs a line of tab-separated values of the form: [num G0 phase] [num G1 phase] [num S phase] [num G2 phase] [num M phase]
where [num G0 phase] denotes the number of cells in the population that are in G0 phase, and so on. These counts are computed through the cell population method GetCellCyclePhaseCount().
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
pCellPopulation | a pointer to the VertexBasedCellPopulation to visit. |
Implements AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 98 of file CellProliferativePhasesCountWriter.cpp.
void CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >::VisitAnyPopulation | ( | AbstractCellPopulation< SPACE_DIM, SPACE_DIM > * | pCellPopulation | ) |
Visit the population and write the number of cells in the population that have each proliferative phase.
Outputs a line of tab-separated values of the form: [num G0 phase] [num G1 phase] [num S phase] [num G2 phase] [num M phase]
where [num G0 phase] denotes the number of cells in the population that are in G0 phase, and so on. These counts are computed through the cell population method GetCellCyclePhaseCount().
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
pCellPopulation | the population to write. |
Definition at line 52 of file CellProliferativePhasesCountWriter.cpp.
References PetscTools::AmMaster(), and AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetCellCyclePhaseCount().
Needed for serialization.
Definition at line 53 of file CellProliferativePhasesCountWriter.hpp.