Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
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#include <CellPopulationAreaWriter.hpp>
Public Member Functions | |
CellPopulationAreaWriter () | |
virtual void | Visit (MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
virtual void | Visit (CaBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
virtual void | Visit (NodeBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
virtual void | Visit (PottsBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
virtual void | Visit (VertexBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
virtual void | Visit (ImmersedBoundaryCellPopulation< SPACE_DIM > *pCellPopulation) |
Public Member Functions inherited from AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM > | |
AbstractCellPopulationWriter (const std::string &rFileName) | |
virtual void | WriteHeader (AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
Public Member Functions inherited from AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM > | |
AbstractCellBasedWriter (const std::string &rFileName) | |
virtual | ~AbstractCellBasedWriter () |
void | CloseFile () |
virtual void | OpenOutputFile (OutputFileHandler &rOutputFileHandler) |
void | OpenOutputFileForAppend (OutputFileHandler &rOutputFileHandler) |
virtual void | WriteTimeStamp () |
virtual void | WriteNewline () |
void | SetFileName (std::string fileName) |
std::string | GetFileName () |
Public Member Functions inherited from Identifiable | |
virtual | ~Identifiable () |
std::string | GetIdentifier () const |
Private Member Functions | |
template<class Archive > | |
void | serialize (Archive &archive, const unsigned int version) |
Friends | |
class | boost::serialization::access |
Additional Inherited Members | |
Protected Attributes inherited from AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM > | |
std::string | mFileName |
out_stream | mpOutStream |
A class written using the visitor pattern for writing cell population volume data to file. Used by MeshBasedCellPopulation.
The output file is called cellpopulationareas.dat by default.
Definition at line 50 of file CellPopulationAreaWriter.hpp.
CellPopulationAreaWriter< ELEMENT_DIM, SPACE_DIM >::CellPopulationAreaWriter | ( | ) |
Default constructor.
Definition at line 49 of file CellPopulationAreaWriter.cpp.
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inlineprivate |
Serialize the object and its member variables.
archive | the archive |
version | the current version of this class |
Definition at line 62 of file CellPopulationAreaWriter.hpp.
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virtual |
Visit the population and write the areas (or volume, in 3D) occupied by the entire cell population and by apoptotic cells. Any ghost nodes present in the population are neglected from these areas.
Outputs a line of space-separated values of the form: [total area] [apoptotic area]
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
pCellPopulation | a pointer to the CaBasedCellPopulation to visit. |
Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 103 of file CellPopulationAreaWriter.cpp.
References EXCEPTION.
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virtual |
Visit the population and write the areas (or volume, in 3D) occupied by the entire cell population and by apoptotic cells. Any ghost nodes present in the population are neglected from these areas.
Outputs a line of space-separated values of the form: [total area] [apoptotic area]
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
pCellPopulation | a pointer to the ImmersedBoundaryCellPopulation to visit. |
Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 127 of file CellPopulationAreaWriter.cpp.
References EXCEPTION.
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virtual |
Visit the population and write the areas (or volume, in 3D) occupied by the entire cell population and by apoptotic cells. Any ghost nodes present in the population are neglected from these areas.
Outputs a line of space-separated values of the form: [total area] [apoptotic area]
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
pCellPopulation | a pointer to the MeshBasedCellPopulation to visit. |
Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 55 of file CellPopulationAreaWriter.cpp.
References VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetDelaunayNodeIndexCorrespondingToVoronoiElementIndex(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetElementIteratorBegin(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetElementIteratorEnd(), TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::GetVolume(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetVolumeOfElement(), and NEVER_REACHED.
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virtual |
Visit the population and write the areas (or volume, in 3D) occupied by the entire cell population and by apoptotic cells. Any ghost nodes present in the population are neglected from these areas.
Outputs a line of space-separated values of the form: [total area] [apoptotic area]
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
pCellPopulation | a pointer to the NodeBasedCellPopulation to visit. |
Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 109 of file CellPopulationAreaWriter.cpp.
References EXCEPTION.
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virtual |
Visit the population and write the areas (or volume, in 3D) occupied by the entire cell population and by apoptotic cells. Any ghost nodes present in the population are neglected from these areas.
Outputs a line of space-separated values of the form: [total area] [apoptotic area]
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
pCellPopulation | a pointer to the PottsBasedCellPopulation to visit. |
Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 115 of file CellPopulationAreaWriter.cpp.
References EXCEPTION.
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virtual |
Visit the population and write the areas (or volume, in 3D) occupied by the entire cell population and by apoptotic cells. Any ghost nodes present in the population are neglected from these areas.
Outputs a line of space-separated values of the form: [total area] [apoptotic area]
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
pCellPopulation | a pointer to the VertexBasedCellPopulation to visit. |
Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 121 of file CellPopulationAreaWriter.cpp.
References EXCEPTION.
Needed for serialization.
Definition at line 54 of file CellPopulationAreaWriter.hpp.