Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
Public Member Functions | Private Member Functions | Private Attributes | Friends | List of all members
ExtrinsicPullModifier< DIM > Class Template Reference

#include <ExtrinsicPullModifier.hpp>

+ Inheritance diagram for ExtrinsicPullModifier< DIM >:
+ Collaboration diagram for ExtrinsicPullModifier< DIM >:

Public Member Functions

 ExtrinsicPullModifier ()
 
virtual ~ExtrinsicPullModifier ()
 
virtual void UpdateAtEndOfTimeStep (AbstractCellPopulation< DIM, DIM > &rCellPopulation)
 
virtual void SetupSolve (AbstractCellPopulation< DIM, DIM > &rCellPopulation, std::string outputDirectory)
 
void SetApplyExtrinsicPullToAllNodes (bool applyExtrinsicPullToAllNodes)
 
void SetSpeed (double speed)
 
bool GetApplyExtrinsicPullToAllNodes ()
 
double GetSpeed ()
 
void OutputSimulationModifierParameters (out_stream &rParamsFile)
 
- Public Member Functions inherited from AbstractCellBasedSimulationModifier< DIM, DIM >
 AbstractCellBasedSimulationModifier ()
 
virtual ~AbstractCellBasedSimulationModifier ()
 
virtual void UpdateAtEndOfTimeStep (AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > &rCellPopulation)=0
 
virtual void UpdateAtEndOfOutputTimeStep (AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > &rCellPopulation)
 
virtual void SetupSolve (AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > &rCellPopulation, std::string outputDirectory)=0
 
virtual void UpdateAtEndOfSolve (AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > &rCellPopulation)
 
void OutputSimulationModifierInfo (out_stream &rParamsFile)
 
- Public Member Functions inherited from Identifiable
virtual ~Identifiable ()
 
std::string GetIdentifier () const
 

Private Member Functions

template<class Archive >
void serialize (Archive &archive, const unsigned int version)
 

Private Attributes

bool mApplyExtrinsicPullToAllNodes
 
double mSpeed
 

Friends

class boost::serialization::access
 

Detailed Description

template<unsigned DIM>
class ExtrinsicPullModifier< DIM >

A modifier class which at each simulation time step applies an extrinsic pull to the right at a specified speed, optionally applying this to all nodes or else just the right-most nodes.

Definition at line 50 of file ExtrinsicPullModifier.hpp.

Constructor & Destructor Documentation

◆ ExtrinsicPullModifier()

template<unsigned DIM>
ExtrinsicPullModifier< DIM >::ExtrinsicPullModifier ( )

Default constructor.

Definition at line 39 of file ExtrinsicPullModifier.cpp.

◆ ~ExtrinsicPullModifier()

template<unsigned DIM>
ExtrinsicPullModifier< DIM >::~ExtrinsicPullModifier ( )
virtual

Destructor.

Definition at line 47 of file ExtrinsicPullModifier.cpp.

Member Function Documentation

◆ GetApplyExtrinsicPullToAllNodes()

template<unsigned DIM>
bool ExtrinsicPullModifier< DIM >::GetApplyExtrinsicPullToAllNodes ( )
Returns
mApplyExtrinsicPullToAllNodes

Definition at line 109 of file ExtrinsicPullModifier.cpp.

◆ GetSpeed()

template<unsigned DIM>
double ExtrinsicPullModifier< DIM >::GetSpeed ( )
Returns
mSpeed

Definition at line 115 of file ExtrinsicPullModifier.cpp.

◆ OutputSimulationModifierParameters()

template<unsigned DIM>
void ExtrinsicPullModifier< DIM >::OutputSimulationModifierParameters ( out_stream &  rParamsFile)
virtual

Overridden OutputSimulationModifierParameters() method. Output any simulation modifier parameters to file.

Parameters
rParamsFilethe file stream to which the parameters are output

Implements AbstractCellBasedSimulationModifier< DIM, DIM >.

Definition at line 121 of file ExtrinsicPullModifier.cpp.

References AbstractCellBasedSimulationModifier< ELEMENT_DIM, SPACE_DIM >::OutputSimulationModifierParameters().

◆ serialize()

template<unsigned DIM>
template<class Archive >
void ExtrinsicPullModifier< DIM >::serialize ( Archive &  archive,
const unsigned int  version 
)
inlineprivate

Boost Serialization method for archiving/checkpointing. Archives the object and its member variables.

Parameters
archiveThe boost archive.
versionThe current version of this class.

Definition at line 64 of file ExtrinsicPullModifier.hpp.

References ExtrinsicPullModifier< DIM >::mApplyExtrinsicPullToAllNodes, and ExtrinsicPullModifier< DIM >::mSpeed.

◆ SetApplyExtrinsicPullToAllNodes()

template<unsigned DIM>
void ExtrinsicPullModifier< DIM >::SetApplyExtrinsicPullToAllNodes ( bool  applyExtrinsicPullToAllNodes)
Parameters
applyExtrinsicPullToAllNodeswhether to apply the extrinsic pull to all nodes in the tissue

Definition at line 97 of file ExtrinsicPullModifier.cpp.

◆ SetSpeed()

template<unsigned DIM>
void ExtrinsicPullModifier< DIM >::SetSpeed ( double  speed)
Parameters
speedthe speed of the extrinsic pull

Definition at line 103 of file ExtrinsicPullModifier.cpp.

◆ SetupSolve()

template<unsigned DIM>
void ExtrinsicPullModifier< DIM >::SetupSolve ( AbstractCellPopulation< DIM, DIM > &  rCellPopulation,
std::string  outputDirectory 
)
virtual

Overridden SetupSolve() method.

Specifies what to do in the simulation before the start of the time loop.

Parameters
rCellPopulationreference to the cell population
outputDirectorythe output directory, relative to where Chaste output is stored

Definition at line 92 of file ExtrinsicPullModifier.cpp.

◆ UpdateAtEndOfTimeStep()

template<unsigned DIM>
void ExtrinsicPullModifier< DIM >::UpdateAtEndOfTimeStep ( AbstractCellPopulation< DIM, DIM > &  rCellPopulation)
virtual

Overridden UpdateAtEndOfTimeStep() method.

Specifies what to do in the simulation at the end of each time step.

Parameters
rCellPopulationreference to the cell population

Definition at line 52 of file ExtrinsicPullModifier.cpp.

References AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetNode(), AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetNumNodes(), SimulationTime::GetTimeStep(), SimulationTime::Instance(), Node< SPACE_DIM >::rGetLocation(), ChasteCuboid< SPACE_DIM >::rGetLowerCorner(), AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::rGetMesh(), Node< SPACE_DIM >::rGetModifiableLocation(), and ChasteCuboid< SPACE_DIM >::rGetUpperCorner().

Friends And Related Symbol Documentation

◆ boost::serialization::access

template<unsigned DIM>
friend class boost::serialization::access
friend

Needed for serialization.

Definition at line 55 of file ExtrinsicPullModifier.hpp.

Member Data Documentation

◆ mApplyExtrinsicPullToAllNodes

template<unsigned DIM>
bool ExtrinsicPullModifier< DIM >::mApplyExtrinsicPullToAllNodes
private

Whether to apply extrinsic pull on all nodes (or just the right-most nodes).

Definition at line 74 of file ExtrinsicPullModifier.hpp.

Referenced by ExtrinsicPullModifier< DIM >::serialize().

◆ mSpeed

template<unsigned DIM>
double ExtrinsicPullModifier< DIM >::mSpeed
private

The speed of the extrinsic pull.

Definition at line 79 of file ExtrinsicPullModifier.hpp.

Referenced by ExtrinsicPullModifier< DIM >::serialize().

The documentation for this class was generated from the following files: