Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
Public Member Functions | Private Member Functions | Friends | List of all members
CellRemovalLocationsWriter< ELEMENT_DIM, SPACE_DIM > Class Template Reference

#include <CellRemovalLocationsWriter.hpp>

+ Inheritance diagram for CellRemovalLocationsWriter< ELEMENT_DIM, SPACE_DIM >:
+ Collaboration diagram for CellRemovalLocationsWriter< ELEMENT_DIM, SPACE_DIM >:

Public Member Functions

 CellRemovalLocationsWriter ()
 
void VisitAnyPopulation (AbstractCellPopulation< SPACE_DIM, SPACE_DIM > *pCellPopulation)
 
virtual void Visit (MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)
 
virtual void Visit (CaBasedCellPopulation< SPACE_DIM > *pCellPopulation)
 
virtual void Visit (NodeBasedCellPopulation< SPACE_DIM > *pCellPopulation)
 
virtual void Visit (PottsBasedCellPopulation< SPACE_DIM > *pCellPopulation)
 
virtual void Visit (VertexBasedCellPopulation< SPACE_DIM > *pCellPopulation)
 
virtual void Visit (ImmersedBoundaryCellPopulation< SPACE_DIM > *pCellPopulation)
 
- Public Member Functions inherited from AbstractCellPopulationEventWriter< ELEMENT_DIM, SPACE_DIM >
 AbstractCellPopulationEventWriter (const std::string &rFileName)
 
virtual void WriteHeader (AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)
 
- Public Member Functions inherited from AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >
 AbstractCellBasedWriter (const std::string &rFileName)
 
virtual ~AbstractCellBasedWriter ()
 
void CloseFile ()
 
virtual void OpenOutputFile (OutputFileHandler &rOutputFileHandler)
 
void OpenOutputFileForAppend (OutputFileHandler &rOutputFileHandler)
 
virtual void WriteTimeStamp ()
 
virtual void WriteNewline ()
 
void SetFileName (std::string fileName)
 
std::string GetFileName ()
 
- Public Member Functions inherited from Identifiable
virtual ~Identifiable ()
 
std::string GetIdentifier () const
 

Private Member Functions

template<class Archive >
void serialize (Archive &archive, const unsigned int version)
 

Friends

class boost::serialization::access
 

Additional Inherited Members

- Protected Attributes inherited from AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >
std::string mFileName
 
out_stream mpOutStream
 

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class CellRemovalLocationsWriter< ELEMENT_DIM, SPACE_DIM >

A writer class to output the time, locations and cell id info of cell removals to a file.

The output file is called removals.dat by default.

Definition at line 49 of file CellRemovalLocationsWriter.hpp.

Constructor & Destructor Documentation

◆ CellRemovalLocationsWriter()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
CellRemovalLocationsWriter< ELEMENT_DIM, SPACE_DIM >::CellRemovalLocationsWriter ( )

Default constructor.

Definition at line 46 of file CellRemovalLocationsWriter.cpp.

Member Function Documentation

◆ serialize()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
template<class Archive >
void CellRemovalLocationsWriter< ELEMENT_DIM, SPACE_DIM >::serialize ( Archive &  archive,
const unsigned int  version 
)
inlineprivate

Serialize the object and its member variables.

Parameters
archivethe archive
versionthe current version of this class

Definition at line 61 of file CellRemovalLocationsWriter.hpp.

◆ Visit() [1/6]

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void CellRemovalLocationsWriter< ELEMENT_DIM, SPACE_DIM >::Visit ( CaBasedCellPopulation< SPACE_DIM > *  pCellPopulation)
virtual

Visit the population and write the data.

Just passes through to VisitAnyPopulation

Parameters
pCellPopulationa pointer to the CaBasedCellPopulation to visit.

Implements AbstractCellPopulationEventWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 80 of file CellRemovalLocationsWriter.cpp.

◆ Visit() [2/6]

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void CellRemovalLocationsWriter< ELEMENT_DIM, SPACE_DIM >::Visit ( ImmersedBoundaryCellPopulation< SPACE_DIM > *  pCellPopulation)
virtual

Visit the population and write the data.

Just passes through to VisitAnyPopulation

Parameters
pCellPopulationa pointer to the ImmersedBoundaryCellPopulation to visit.

Implements AbstractCellPopulationEventWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 104 of file CellRemovalLocationsWriter.cpp.

◆ Visit() [3/6]

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void CellRemovalLocationsWriter< ELEMENT_DIM, SPACE_DIM >::Visit ( MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > *  pCellPopulation)
virtual

Visit the population and write the data.

Just passes through to VisitAnyPopulation

Parameters
pCellPopulationa pointer to the MeshBasedCellPopulation to visit.

Implements AbstractCellPopulationEventWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 65 of file CellRemovalLocationsWriter.cpp.

References AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::ClearRemovalsInformation(), and AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetRemovalsInformation().

◆ Visit() [4/6]

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void CellRemovalLocationsWriter< ELEMENT_DIM, SPACE_DIM >::Visit ( NodeBasedCellPopulation< SPACE_DIM > *  pCellPopulation)
virtual

Visit the population and write the data.

Just passes through to VisitAnyPopulation

Parameters
pCellPopulationa pointer to the NodeBasedCellPopulation to visit.

Implements AbstractCellPopulationEventWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 86 of file CellRemovalLocationsWriter.cpp.

◆ Visit() [5/6]

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void CellRemovalLocationsWriter< ELEMENT_DIM, SPACE_DIM >::Visit ( PottsBasedCellPopulation< SPACE_DIM > *  pCellPopulation)
virtual

Visit the population and write the data.

Just passes through to VisitAnyPopulation

Parameters
pCellPopulationa pointer to the PottsBasedCellPopulation to visit.

Implements AbstractCellPopulationEventWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 92 of file CellRemovalLocationsWriter.cpp.

◆ Visit() [6/6]

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void CellRemovalLocationsWriter< ELEMENT_DIM, SPACE_DIM >::Visit ( VertexBasedCellPopulation< SPACE_DIM > *  pCellPopulation)
virtual

Visit the population and write the data.

Just passes through to VisitAnyPopulation

Parameters
pCellPopulationa pointer to the VertexBasedCellPopulation to visit.

Implements AbstractCellPopulationEventWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 98 of file CellRemovalLocationsWriter.cpp.

◆ VisitAnyPopulation()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void CellRemovalLocationsWriter< ELEMENT_DIM, SPACE_DIM >::VisitAnyPopulation ( AbstractCellPopulation< SPACE_DIM, SPACE_DIM > *  pCellPopulation)

Visit the population and write the data.

Outputs a line of tab-separated values of the form: [num divisions] [Div time 0] [Div 0 x-pos] [Div 0 y-pos] [Div 0 z-pos] [Parent 0 Age] [Parent 0 ID] [Child 0 ID] [Div time 1] [Div 1 x-pos] ...

where [num divisions] denotes the number of Divisions since the previous output step with other information about each division event.

This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.

Parameters
pCellPopulationa pointer to the population to visit.

Definition at line 52 of file CellRemovalLocationsWriter.cpp.

References AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::ClearRemovalsInformation(), and AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetRemovalsInformation().

Friends And Related Symbol Documentation

◆ boost::serialization::access

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
friend class boost::serialization::access
friend

Needed for serialization.

Definition at line 53 of file CellRemovalLocationsWriter.hpp.

The documentation for this class was generated from the following files: