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Chaste Commit::333233612e3dcc941d260418acd7b5ccdc30390e
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#include <CellRemovalLocationsWriter.hpp>
Public Member Functions | |
CellRemovalLocationsWriter () | |
void | VisitAnyPopulation (AbstractCellPopulation< SPACE_DIM, SPACE_DIM > *pCellPopulation) |
virtual void | Visit (MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
virtual void | Visit (CaBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
virtual void | Visit (NodeBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
virtual void | Visit (PottsBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
virtual void | Visit (VertexBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
virtual void | Visit (ImmersedBoundaryCellPopulation< SPACE_DIM > *pCellPopulation) |
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AbstractCellPopulationEventWriter (const std::string &rFileName) | |
virtual void | WriteHeader (AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
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AbstractCellBasedWriter (const std::string &rFileName) | |
virtual | ~AbstractCellBasedWriter () |
void | CloseFile () |
virtual void | OpenOutputFile (OutputFileHandler &rOutputFileHandler) |
void | OpenOutputFileForAppend (OutputFileHandler &rOutputFileHandler) |
virtual void | WriteTimeStamp () |
virtual void | WriteNewline () |
void | SetFileName (std::string fileName) |
std::string | GetFileName () |
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virtual | ~Identifiable () |
std::string | GetIdentifier () const |
Private Member Functions | |
template<class Archive > | |
void | serialize (Archive &archive, const unsigned int version) |
Friends | |
class | boost::serialization::access |
Additional Inherited Members | |
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std::string | mFileName |
out_stream | mpOutStream |
A writer class to output the time, locations and cell id info of cell removals to a file.
The output file is called removals.dat by default.
Definition at line 49 of file CellRemovalLocationsWriter.hpp.
CellRemovalLocationsWriter< ELEMENT_DIM, SPACE_DIM >::CellRemovalLocationsWriter | ( | ) |
Default constructor.
Definition at line 46 of file CellRemovalLocationsWriter.cpp.
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inlineprivate |
Serialize the object and its member variables.
archive | the archive |
version | the current version of this class |
Definition at line 61 of file CellRemovalLocationsWriter.hpp.
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virtual |
Visit the population and write the data.
Just passes through to VisitAnyPopulation
pCellPopulation | a pointer to the CaBasedCellPopulation to visit. |
Implements AbstractCellPopulationEventWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 80 of file CellRemovalLocationsWriter.cpp.
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virtual |
Visit the population and write the data.
Just passes through to VisitAnyPopulation
pCellPopulation | a pointer to the ImmersedBoundaryCellPopulation to visit. |
Implements AbstractCellPopulationEventWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 104 of file CellRemovalLocationsWriter.cpp.
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virtual |
Visit the population and write the data.
Just passes through to VisitAnyPopulation
pCellPopulation | a pointer to the MeshBasedCellPopulation to visit. |
Implements AbstractCellPopulationEventWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 65 of file CellRemovalLocationsWriter.cpp.
References AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::ClearRemovalsInformation(), and AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetRemovalsInformation().
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virtual |
Visit the population and write the data.
Just passes through to VisitAnyPopulation
pCellPopulation | a pointer to the NodeBasedCellPopulation to visit. |
Implements AbstractCellPopulationEventWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 86 of file CellRemovalLocationsWriter.cpp.
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virtual |
Visit the population and write the data.
Just passes through to VisitAnyPopulation
pCellPopulation | a pointer to the PottsBasedCellPopulation to visit. |
Implements AbstractCellPopulationEventWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 92 of file CellRemovalLocationsWriter.cpp.
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virtual |
Visit the population and write the data.
Just passes through to VisitAnyPopulation
pCellPopulation | a pointer to the VertexBasedCellPopulation to visit. |
Implements AbstractCellPopulationEventWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 98 of file CellRemovalLocationsWriter.cpp.
void CellRemovalLocationsWriter< ELEMENT_DIM, SPACE_DIM >::VisitAnyPopulation | ( | AbstractCellPopulation< SPACE_DIM, SPACE_DIM > * | pCellPopulation | ) |
Visit the population and write the data.
Outputs a line of tab-separated values of the form: [num divisions] [Div time 0] [Div 0 x-pos] [Div 0 y-pos] [Div 0 z-pos] [Parent 0 Age] [Parent 0 ID] [Child 0 ID] [Div time 1] [Div 1 x-pos] ...
where [num divisions] denotes the number of Divisions since the previous output step with other information about each division event.
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
pCellPopulation | a pointer to the population to visit. |
Definition at line 52 of file CellRemovalLocationsWriter.cpp.
References AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::ClearRemovalsInformation(), and AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetRemovalsInformation().
Needed for serialization.
Definition at line 53 of file CellRemovalLocationsWriter.hpp.