Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
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#include <PlaneBasedCellKiller.hpp>
Public Member Functions | |
PlaneBasedCellKiller (AbstractCellPopulation< DIM > *pCellPopulation, c_vector< double, DIM > point, c_vector< double, DIM > normal) | |
const c_vector< double, DIM > & | rGetPointOnPlane () const |
const c_vector< double, DIM > & | rGetNormalToPlane () const |
virtual void | CheckAndLabelCellsForApoptosisOrDeath () |
void | OutputCellKillerParameters (out_stream &rParamsFile) |
Public Member Functions inherited from AbstractCellKiller< DIM > | |
AbstractCellKiller (AbstractCellPopulation< SPACE_DIM > *pCellPopulation) | |
virtual | ~AbstractCellKiller () |
const AbstractCellPopulation< SPACE_DIM > * | GetCellPopulation () const |
void | OutputCellKillerInfo (out_stream &rParamsFile) |
Public Member Functions inherited from Identifiable | |
virtual | ~Identifiable () |
std::string | GetIdentifier () const |
Private Member Functions | |
template<class Archive > | |
void | serialize (Archive &archive, const unsigned int version) |
Private Attributes | |
c_vector< double, DIM > | mPointOnPlane |
c_vector< double, DIM > | mNormalToPlane |
Friends | |
class | boost::serialization::access |
Additional Inherited Members | |
Protected Attributes inherited from AbstractCellKiller< DIM > | |
AbstractCellPopulation< SPACE_DIM > * | mpCellPopulation |
A cell killer that kills cells if they are outside the domain. defined by a point, mPointOnPlane, and an outward pointing normal, mNormalToPlane. Works for all CellPopulations.
Definition at line 51 of file PlaneBasedCellKiller.hpp.
PlaneBasedCellKiller< DIM >::PlaneBasedCellKiller | ( | AbstractCellPopulation< DIM > * | pCellPopulation, |
c_vector< double, DIM > | point, | ||
c_vector< double, DIM > | normal | ||
) |
Default constructor.
pCellPopulation | pointer to a cell population |
point | point on the plane which nodes cannot cross |
normal | the outward pointing unit normal to the boundary plane |
Definition at line 39 of file PlaneBasedCellKiller.cpp.
References PlaneBasedCellKiller< DIM >::mNormalToPlane.
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virtual |
Loops over cells and kills cells outside boundary.
Implements AbstractCellKiller< DIM >.
Definition at line 62 of file PlaneBasedCellKiller.cpp.
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virtual |
Overridden OutputCellKillerParameters() method.
rParamsFile | the file stream to which the parameters are output |
Implements AbstractCellKiller< DIM >.
Definition at line 79 of file PlaneBasedCellKiller.cpp.
References AbstractCellKiller< SPACE_DIM >::OutputCellKillerParameters().
const c_vector< double, DIM > & PlaneBasedCellKiller< DIM >::rGetNormalToPlane | ( | ) | const |
Definition at line 56 of file PlaneBasedCellKiller.cpp.
const c_vector< double, DIM > & PlaneBasedCellKiller< DIM >::rGetPointOnPlane | ( | ) | const |
Definition at line 50 of file PlaneBasedCellKiller.cpp.
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inlineprivate |
Archive the object.
archive | the archive |
version | the current version of this class |
Definition at line 74 of file PlaneBasedCellKiller.hpp.
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friend |
Needed for serialization.
Definition at line 66 of file PlaneBasedCellKiller.hpp.
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private |
The outward pointing unit normal to the boundary plane.
Definition at line 63 of file PlaneBasedCellKiller.hpp.
Referenced by PlaneBasedCellKiller< DIM >::PlaneBasedCellKiller().
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private |
A point on the plane which nodes cannot cross.
Definition at line 58 of file PlaneBasedCellKiller.hpp.