Chaste Commit::ca8ccdedf819b6e02855bc0e8e6f50bdecbc5208
PlaneBasedCellKiller.hpp
1/*
2
3Copyright (c) 2005-2024, University of Oxford.
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34*/
35
36#ifndef PLANEBASEDCELLKILLER_HPP_
37#define PLANEBASEDCELLKILLER_HPP_
38
39#include "AbstractCellKiller.hpp"
40
42#include <boost/serialization/base_object.hpp>
43#include <boost/serialization/vector.hpp>
44
50template<unsigned DIM>
52{
53private:
54
58 c_vector<double, DIM> mPointOnPlane;
59
63 c_vector<double, DIM> mNormalToPlane;
64
73 template<class Archive>
74 void serialize(Archive & archive, const unsigned int version)
75 {
76 archive & boost::serialization::base_object<AbstractCellKiller<DIM> >(*this);
77 }
78
79public:
80
89 c_vector<double, DIM> point,
90 c_vector<double, DIM> normal);
91
95 const c_vector<double, DIM>& rGetPointOnPlane() const;
96
100 const c_vector<double, DIM>& rGetNormalToPlane() const;
101
106
112 void OutputCellKillerParameters(out_stream& rParamsFile);
113};
114
117
118namespace boost
119{
120namespace serialization
121{
125template<class Archive, unsigned DIM>
126inline void save_construct_data(
127 Archive & ar, const PlaneBasedCellKiller<DIM> * t, const unsigned int file_version)
128{
129 // Save data required to construct instance
130 const AbstractCellPopulation<DIM>* const p_cell_population = t->GetCellPopulation();
131 ar << p_cell_population;
132
133 // Archive c_vectors one component at a time
134 c_vector<double, DIM> point = t->rGetPointOnPlane();
135 for (unsigned i=0; i<DIM; i++)
136 {
137 ar << point[i];
138 }
139 c_vector<double, DIM> normal = t->rGetNormalToPlane();
140 for (unsigned i=0; i<DIM; i++)
141 {
142 ar << normal[i];
143 }
144}
145
149template<class Archive, unsigned DIM>
150inline void load_construct_data(
151 Archive & ar, PlaneBasedCellKiller<DIM> * t, const unsigned int file_version)
152{
153 // Retrieve data from archive required to construct new instance
154 AbstractCellPopulation<DIM>* p_cell_population;
155 ar >> p_cell_population;
156
157 // Archive c_vectors one component at a time
158 c_vector<double, DIM> point;
159 for (unsigned i=0; i<DIM; i++)
160 {
161 ar >> point[i];
162 }
163 c_vector<double, DIM> normal;
164 for (unsigned i=0; i<DIM; i++)
165 {
166 ar >> normal[i];
167 }
168
169 // Invoke inplace constructor to initialise instance
170 ::new(t)PlaneBasedCellKiller<DIM>(p_cell_population, point, normal);
171}
172}
173} // namespace ...
174
175#endif /*PLANEBASEDCELLKILLER_HPP_*/
gcov doesn't like this file...
#define EXPORT_TEMPLATE_CLASS_SAME_DIMS(CLASS)
void serialize(Archive &archive, const unsigned int version)
void OutputCellKillerParameters(out_stream &rParamsFile)
const c_vector< double, DIM > & rGetNormalToPlane() const
c_vector< double, DIM > mNormalToPlane
const c_vector< double, DIM > & rGetPointOnPlane() const
friend class boost::serialization::access
c_vector< double, DIM > mPointOnPlane
virtual void CheckAndLabelCellsForApoptosisOrDeath()