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Chaste Commit::333233612e3dcc941d260418acd7b5ccdc30390e
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#include <LegacyCellProliferativeTypesWriter.hpp>
Public Member Functions | |
LegacyCellProliferativeTypesWriter () | |
double | GetCellDataForVtkOutput (CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
virtual void | VisitCell (CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
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AbstractCellWriter (const std::string &rFileName) | |
virtual c_vector< double, SPACE_DIM > | GetVectorCellDataForVtkOutput (CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
bool | GetOutputScalarData () |
bool | GetOutputVectorData () |
void | SetVtkCellDataName (std::string vtkCellDataName) |
void | SetVtkVectorCellDataName (std::string vtkCellDataName) |
std::string | GetVtkCellDataName () |
std::string | GetVtkVectorCellDataName () |
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AbstractCellBasedWriter (const std::string &rFileName) | |
virtual | ~AbstractCellBasedWriter () |
void | CloseFile () |
virtual void | OpenOutputFile (OutputFileHandler &rOutputFileHandler) |
void | OpenOutputFileForAppend (OutputFileHandler &rOutputFileHandler) |
virtual void | WriteTimeStamp () |
virtual void | WriteNewline () |
void | SetFileName (std::string fileName) |
std::string | GetFileName () |
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virtual | ~Identifiable () |
std::string | GetIdentifier () const |
Private Member Functions | |
template<class Archive > | |
void | serialize (Archive &archive, const unsigned int version) |
Friends | |
class | boost::serialization::access |
Additional Inherited Members | |
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bool | mOutputScalarData |
bool | mOutputVectorData |
std::string | mVtkCellDataName |
std::string | mVtkVectorCellDataName |
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std::string | mFileName |
out_stream | mpOutStream |
A class written using the visitor pattern for writing cell proliferative types to file.
Note this version will overwitew cell color if the cell is lableled or mutant for use in the Java Vizialiser.
The output file is called results.vizcelltypes by default. If VTK is switched on, then the writer also specifies the VTK output for each cell, which is stored in the VTK cell data "Cell types" by default.
Definition at line 54 of file LegacyCellProliferativeTypesWriter.hpp.
LegacyCellProliferativeTypesWriter< ELEMENT_DIM, SPACE_DIM >::LegacyCellProliferativeTypesWriter | ( | ) |
Default constructor.
Definition at line 44 of file LegacyCellProliferativeTypesWriter.cpp.
References AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >::mVtkCellDataName.
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virtual |
Overridden GetCellDataForVtkOutput() method.
Get a double associated with a cell. This method reduces duplication of code between the methods VisitCell() and AddVtkData().
pCell | a cell |
pCellPopulation | a pointer to the cell population owning the cell |
Reimplemented from AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 51 of file LegacyCellProliferativeTypesWriter.cpp.
References CellPropertyCollection::GetProperties(), and CellPropertyCollection::GetProperty().
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inlineprivate |
Serialize the object and its member variables.
archive | the archive |
version | the current version of this class |
Definition at line 66 of file LegacyCellProliferativeTypesWriter.hpp.
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virtual |
Overridden VisitCell() method.
Visit a cell and write its proliferative type, as given by this property's member mColour.
Outputs a line of space-separated values of the form: ...[cell proliferative type] ...
Note that if the cell is undergoing apoptosis (i.e. has the property ApoptoticCellProperty), then the hard-coded value 6 is written. If instead the cell is labelled (i.e. has the property CellLabel), then this property's member mColour is instead written. Lastly, if the cell has a mutation state other than WildTypeCellMutationState, then this property's member mColour is instead written.
This is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
pCell | a cell |
pCellPopulation | a pointer to the cell population owning the cell |
Implements AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 76 of file LegacyCellProliferativeTypesWriter.cpp.
References CellPropertyCollection::GetProperties(), and CellPropertyCollection::GetProperty().
Needed for serialization.
Definition at line 58 of file LegacyCellProliferativeTypesWriter.hpp.