CellBetaCateninWriter< ELEMENT_DIM, SPACE_DIM > Class Template Reference

#include <CellBetaCateninWriter.hpp>

Inheritance diagram for CellBetaCateninWriter< ELEMENT_DIM, SPACE_DIM >:

Collaboration diagram for CellBetaCateninWriter< ELEMENT_DIM, SPACE_DIM >:

Public Member Functions
	CellBetaCateninWriter ()
double	GetCellDataForVtkOutput (CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)
virtual void	VisitCell (CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)
Public Member Functions inherited from AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >
	AbstractCellWriter (const std::string &rFileName)
virtual c_vector< double, SPACE_DIM >	GetVectorCellDataForVtkOutput (CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)
bool	GetOutputScalarData ()
bool	GetOutputVectorData ()
void	SetVtkCellDataName (std::string vtkCellDataName)
void	SetVtkVectorCellDataName (std::string vtkCellDataName)
std::string	GetVtkCellDataName ()
std::string	GetVtkVectorCellDataName ()
Public Member Functions inherited from AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >
	AbstractCellBasedWriter (const std::string &rFileName)
virtual	~AbstractCellBasedWriter ()
void	CloseFile ()
virtual void	OpenOutputFile (OutputFileHandler &rOutputFileHandler)
void	OpenOutputFileForAppend (OutputFileHandler &rOutputFileHandler)
virtual void	WriteTimeStamp ()
virtual void	WriteNewline ()
void	SetFileName (std::string fileName)
std::string	GetFileName ()
Public Member Functions inherited from Identifiable
virtual	~Identifiable ()
std::string	GetIdentifier () const

Private Member Functions
template<class Archive >
void	serialize (Archive &archive, const unsigned int version)

Friends
class	boost::serialization::access

Additional Inherited Members
Protected Attributes inherited from AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >
bool	mOutputScalarData
bool	mOutputVectorData
std::string	mVtkCellDataName
std::string	mVtkVectorCellDataName
Protected Attributes inherited from AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >
std::string	mFileName
out_stream	mpOutStream

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class CellBetaCateninWriter< ELEMENT_DIM, SPACE_DIM >

A class written using the visitor pattern for writing cell beta catenin levels to file.

Definition at line 46 of file CellBetaCateninWriter.hpp.

Constructor & Destructor Documentation

CellBetaCateninWriter()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

CellBetaCateninWriter< ELEMENT_DIM, SPACE_DIM >::CellBetaCateninWriter

(

)

Default constructor.

Definition at line 40 of file CellBetaCateninWriter.cpp.

References AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >::mVtkCellDataName.

Member Function Documentation

GetCellDataForVtkOutput()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

double CellBetaCateninWriter< ELEMENT_DIM, SPACE_DIM >::GetCellDataForVtkOutput ( CellPtr  pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *  pCellPopulation  )

virtual

Overridden GetCellDataForVtkOutput() method.

Get a double associated with a cell. This method reduces duplication of code between the methods VisitCell() and AddVtkData().

In this overridden method, since we are only able to output one double for each cell, we choose to output the cytoplasmic beta catenin concentration. Thus, at present, the membrane-bound and nuclear beta catenin concentrations cannot be visualized as VTK output. If this were required, it would be straightforward to implement within the current framework, for example by defined two new writer classes.

Parameters

pCell	a cell
pCellPopulation	a pointer to the cell population owning the cell

Returns

data associated with the cell

Reimplemented from AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 47 of file CellBetaCateninWriter.cpp.

References AbstractVanLeeuwen2009WntSwatCellCycleModel::GetCytoplasmicBetaCateninLevel().

serialize()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

template<class Archive >

void CellBetaCateninWriter< ELEMENT_DIM, SPACE_DIM >::serialize ( Archive &  archive, const unsigned int  version  )

inlineprivate

Serialize the object and its member variables.

Parameters

archive	the archive
version	the current version of this class

Definition at line 58 of file CellBetaCateninWriter.hpp.

VisitCell()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void CellBetaCateninWriter< ELEMENT_DIM, SPACE_DIM >::VisitCell ( CellPtr  pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *  pCellPopulation  )

virtual

Overridden VisitCell() method. Visit a cell and write its data.

Parameters

pCell	the cell to write
pCellPopulation	a pointer to the cell population owning the cell.

Implements AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 56 of file CellBetaCateninWriter.cpp.

References EXCEPTION, AbstractVanLeeuwen2009WntSwatCellCycleModel::GetCytoplasmicBetaCateninLevel(), AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetLocationIndexUsingCell(), AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetLocationOfCellCentre(), AbstractVanLeeuwen2009WntSwatCellCycleModel::GetMembraneBoundBetaCateninLevel(), and AbstractVanLeeuwen2009WntSwatCellCycleModel::GetNuclearBetaCateninLevel().

Friends And Related Symbol Documentation

boost::serialization::access

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

friend class boost::serialization::access

friend

Needed for serialization.

Definition at line 50 of file CellBetaCateninWriter.hpp.

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The documentation for this class was generated from the following files:

• crypt/src/writers/CellBetaCateninWriter.hpp
• crypt/src/writers/CellBetaCateninWriter.cpp