Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
CellBetaCateninWriter.cpp
1/*
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34*/
35
36#include "CellBetaCateninWriter.hpp"
37#include "AbstractCellPopulation.hpp"
38
39template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
41 : AbstractCellWriter<ELEMENT_DIM, SPACE_DIM>("results.vizbetacatenin")
42{
43 this->mVtkCellDataName = "Beta catenin";
44}
45
46template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
48{
49 AbstractVanLeeuwen2009WntSwatCellCycleModel* p_model = dynamic_cast<AbstractVanLeeuwen2009WntSwatCellCycleModel*>(pCell->GetCellCycleModel());
50 double b_cat_cytoplasm = p_model->GetCytoplasmicBetaCateninLevel();
51
52 return b_cat_cytoplasm;
53}
54
55template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
57{
58 if (SPACE_DIM != 2)
59 {
60 EXCEPTION("This function is only valid in 2D"); // LCOV_EXCL_LINE
61 }
62
63 unsigned global_index = pCellPopulation->GetLocationIndexUsingCell(pCell);
64 double x = pCellPopulation->GetLocationOfCellCentre(pCell)[0];
65 double y = pCellPopulation->GetLocationOfCellCentre(pCell)[1];
66
67 AbstractVanLeeuwen2009WntSwatCellCycleModel* p_model = dynamic_cast<AbstractVanLeeuwen2009WntSwatCellCycleModel*>(pCell->GetCellCycleModel());
68 double b_cat_membrane = p_model->GetMembraneBoundBetaCateninLevel();
69 double b_cat_cytoplasm = p_model->GetCytoplasmicBetaCateninLevel();
70 double b_cat_nuclear = p_model->GetNuclearBetaCateninLevel();
71
72 *this->mpOutStream << global_index << " " << x << " " << y << " " << b_cat_membrane << " " << b_cat_cytoplasm << " " << b_cat_nuclear << " ";
73}
74
75// Explicit instantiation
76template class CellBetaCateninWriter<1,1>;
77template class CellBetaCateninWriter<1,2>;
78template class CellBetaCateninWriter<2,2>;
79template class CellBetaCateninWriter<1,3>;
80template class CellBetaCateninWriter<2,3>;
81template class CellBetaCateninWriter<3,3>;
82
84// Declare identifier for the serializer
#define EXCEPTION(message)
#define EXPORT_TEMPLATE_CLASS_ALL_DIMS(CLASS)
virtual c_vector< double, SPACE_DIM > GetLocationOfCellCentre(CellPtr pCell)=0
unsigned GetLocationIndexUsingCell(CellPtr pCell)
double GetCellDataForVtkOutput(CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)
virtual void VisitCell(CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)