Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
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#include <SloughingCellKiller.hpp>
Public Member Functions | |
SloughingCellKiller (AbstractCellPopulation< DIM > *pCrypt, double sloughHeight, bool sloughSides=false, double sloughWidth=10.0) | |
virtual | ~SloughingCellKiller () |
bool | GetSloughSides () const |
double | GetSloughHeight () const |
double | GetSloughWidth () const |
virtual void | CheckAndLabelCellsForApoptosisOrDeath () |
void | OutputCellKillerParameters (out_stream &rParamsFile) |
Public Member Functions inherited from AbstractCellKiller< DIM > | |
AbstractCellKiller (AbstractCellPopulation< SPACE_DIM > *pCellPopulation) | |
virtual | ~AbstractCellKiller () |
const AbstractCellPopulation< SPACE_DIM > * | GetCellPopulation () const |
void | OutputCellKillerInfo (out_stream &rParamsFile) |
Public Member Functions inherited from Identifiable | |
virtual | ~Identifiable () |
std::string | GetIdentifier () const |
Private Member Functions | |
template<class Archive > | |
void | serialize (Archive &archive, const unsigned int version) |
Private Attributes | |
bool | mSloughSides |
double | mSloughHeight |
double | mSloughWidth |
Friends | |
class | boost::serialization::access |
Additional Inherited Members | |
Protected Attributes inherited from AbstractCellKiller< DIM > | |
AbstractCellPopulation< SPACE_DIM > * | mpCellPopulation |
A cell killer that kills cells if they are outside the domain. The domain is assumed to start at x=0 and y=0. By default only cells are sloughed if y>mSloughLength. To slough the sides call the constructor with the appropriate parameter.
Definition at line 51 of file SloughingCellKiller.hpp.
SloughingCellKiller< DIM >::SloughingCellKiller | ( | AbstractCellPopulation< DIM > * | pCrypt, |
double | sloughHeight, | ||
bool | sloughSides = false , |
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double | sloughWidth = 10.0 |
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) |
Default constructor.
pCrypt | pointer to a cell population |
sloughHeight | the height at which to slough from the domain |
sloughSides | whether to slough cells at the side of the domain |
sloughWidth | the width of the domain (note slough on left and right) |
Definition at line 40 of file SloughingCellKiller.cpp.
References SloughingCellKiller< DIM >::mSloughHeight, and SloughingCellKiller< DIM >::mSloughWidth.
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inlinevirtual |
Destructor
Definition at line 102 of file SloughingCellKiller.hpp.
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virtual |
Loops over cells and kills cells outside boundary.
Implements AbstractCellKiller< DIM >.
Definition at line 70 of file SloughingCellKiller.cpp.
References EXCEPTION, and NEVER_REACHED.
double SloughingCellKiller< DIM >::GetSloughHeight | ( | ) | const |
Definition at line 58 of file SloughingCellKiller.cpp.
bool SloughingCellKiller< DIM >::GetSloughSides | ( | ) | const |
Definition at line 52 of file SloughingCellKiller.cpp.
double SloughingCellKiller< DIM >::GetSloughWidth | ( | ) | const |
Definition at line 64 of file SloughingCellKiller.cpp.
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virtual |
Outputs cell killer parameters to file
As this method is pure virtual, it must be overridden in subclasses.
rParamsFile | the file stream to which the parameters are output |
Implements AbstractCellKiller< DIM >.
Definition at line 121 of file SloughingCellKiller.cpp.
References AbstractCellKiller< SPACE_DIM >::OutputCellKillerParameters().
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inlineprivate |
Archive the object.
archive | the archive |
version | the current version of this class |
Definition at line 79 of file SloughingCellKiller.hpp.
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friend |
Needed for serialization.
Definition at line 71 of file SloughingCellKiller.hpp.
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private |
The height of the domain, non-dimensionalised with cell length. This parameter determines when cells are sloughed from the domain.
Definition at line 62 of file SloughingCellKiller.hpp.
Referenced by SloughingCellKiller< DIM >::SloughingCellKiller().
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private |
Whether cells should be sloughed from the sides of the crypt.
Definition at line 56 of file SloughingCellKiller.hpp.
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private |
The width of the domain, non-dimensionalised with cell length. This determines when cells are sloughed from sides of the domain in 2D.
Definition at line 68 of file SloughingCellKiller.hpp.
Referenced by SloughingCellKiller< DIM >::SloughingCellKiller().