#include <MonodomainPurkinjeProblem.hpp>

Inheritance diagram for MonodomainPurkinjeProblem< ELEMENT_DIM, SPACE_DIM >:

Collaboration diagram for MonodomainPurkinjeProblem< ELEMENT_DIM, SPACE_DIM >:

Public Member Functions
	MonodomainPurkinjeProblem (AbstractPurkinjeCellFactory< ELEMENT_DIM, SPACE_DIM > *pCellFactory)

	MonodomainPurkinjeProblem ()

virtual	~MonodomainPurkinjeProblem ()

void	WriteInfo (double time)

virtual void	DefineWriterColumns (bool extending)

virtual void	WriteOneStep (double time, Vec voltageVec)

Public Member Functions inherited from AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
	AbstractCardiacProblem (AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM > *pCellFactory)

	AbstractCardiacProblem ()

virtual	~AbstractCardiacProblem ()

void	Initialise ()

void	SetNodesPerProcessorFilename (const std::string &rFilename)

void	SetBoundaryConditionsContainer (BccType pBcc)

virtual void	PreSolveChecks ()

void	SetMesh (AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh)

void	PrintOutput (bool rPrintOutput)

void	SetWriteInfo (bool writeInfo=true)

Vec	GetSolution ()

DistributedVector	GetSolutionDistributedVector ()

double	GetCurrentTime ()

AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > &	rGetMesh ()

AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM > *	GetTissue ()

void	Solve ()

void	CloseFilesAndPostProcess ()

void	DefineExtraVariablesWriterColumns (bool extending)

void	WriteExtraVariablesOneStep ()

bool	InitialiseWriter ()

void	SetUseHdf5DataWriterCache (bool useCache=true)

void	SetHdf5DataWriterTargetChunkSizeAndAlignment (hsize_t size)

void	SetOutputNodes (std::vector< unsigned > &rNodesToOutput)

Hdf5DataReader	GetDataReader ()

virtual void	AtBeginningOfTimestep (double time)

virtual void	OnEndOfTimestep (double time)

virtual void	SetUpAdditionalStoppingTimes (std::vector< double > &rAdditionalStoppingTimes)

void	SetUseTimeAdaptivityController (bool useAdaptivity, AbstractTimeAdaptivityController *pController=NULL)

template<class Archive >
void	LoadExtraArchive (Archive &archive, unsigned version)

virtual bool	GetHasBath ()

virtual void	SetElectrodes ()

void	AddOutputModifier (boost::shared_ptr< AbstractOutputModifier > pOutputModifier)

Public Member Functions inherited from AbstractUntemplatedCardiacProblem
virtual	~AbstractUntemplatedCardiacProblem ()

Protected Member Functions
AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM > *	CreateCardiacTissue ()

AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 2 > *	CreateSolver ()

virtual void	CreateMeshFromHeartConfig ()

Vec	CreateInitialCondition ()

Protected Attributes
unsigned	mPurkinjeVoltageColumnId

Protected Attributes inherited from AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
std::string	mMeshFilename

bool	mAllocatedMemoryForMesh

bool	mWriteInfo

bool	mPrintOutput

std::vector< unsigned >	mNodesToOutput

unsigned	mVoltageColumnId

std::vector< unsigned >	mExtraVariablesId

unsigned	mTimeColumnId

unsigned	mNodeColumnId

AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM > *	mpCardiacTissue

BccType	mpBoundaryConditionsContainer

BccType	mpDefaultBoundaryConditionsContainer

AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > *	mpSolver

AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM > *	mpCellFactory

AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *	mpMesh

Vec	mSolution

double	mCurrentTime

AbstractTimeAdaptivityController *	mpTimeAdaptivityController

Hdf5DataWriter *	mpWriter

bool	mUseHdf5DataWriterCache

hsize_t	mHdf5DataWriterChunkSizeAndAlignment

std::vector< boost::shared_ptr< AbstractOutputModifier > >	mOutputModifiers

Private Member Functions
template<class Archive >
void	serialize (Archive &archive, const unsigned int version)

Friends
class	boost::serialization::access

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM = ELEMENT_DIM>
class MonodomainPurkinjeProblem< ELEMENT_DIM, SPACE_DIM >

Class which specifies and solves a monodomain problem with Purkinje fibres.

Definition at line 51 of file MonodomainPurkinjeProblem.hpp.

Constructor & Destructor Documentation

◆ MonodomainPurkinjeProblem() [1/2]

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

MonodomainPurkinjeProblem< ELEMENT_DIM, SPACE_DIM >::MonodomainPurkinjeProblem ( AbstractPurkinjeCellFactory< ELEMENT_DIM, SPACE_DIM > * pCellFactory )

Constructor

Parameters

pCellFactory user defined cell factory which shows how the tissue should create cells.

Definition at line 93 of file MonodomainPurkinjeProblem.cpp.