Chaste Commit::ca8ccdedf819b6e02855bc0e8e6f50bdecbc5208
MonodomainPurkinjeProblem.hpp
1/*
2
3Copyright (c) 2005-2024, University of Oxford.
4All rights reserved.
5
6University of Oxford means the Chancellor, Masters and Scholars of the
7University of Oxford, having an administrative office at Wellington
8Square, Oxford OX1 2JD, UK.
9
10This file is part of Chaste.
11
12Redistribution and use in source and binary forms, with or without
13modification, are permitted provided that the following conditions are met:
14 * Redistributions of source code must retain the above copyright notice,
15 this list of conditions and the following disclaimer.
16 * Redistributions in binary form must reproduce the above copyright notice,
17 this list of conditions and the following disclaimer in the documentation
18 and/or other materials provided with the distribution.
19 * Neither the name of the University of Oxford nor the names of its
20 contributors may be used to endorse or promote products derived from this
21 software without specific prior written permission.
22
23THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
24AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
25IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
26ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
27LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
28CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
29GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
30HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
31LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
32OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
33
34*/
35
36#ifndef MONODOMAINPURKINJEPROBLEM_HPP_
37#define MONODOMAINPURKINJEPROBLEM_HPP_
38
40#include <boost/serialization/base_object.hpp>
41#include "AbstractCardiacProblem.hpp"
42#include "AbstractCardiacTissue.hpp"
43#include "AbstractPurkinjeCellFactory.hpp"
44#include "MonodomainTissue.hpp"
45
46
50template<unsigned ELEMENT_DIM, unsigned SPACE_DIM = ELEMENT_DIM>
51class MonodomainPurkinjeProblem : public AbstractCardiacProblem<ELEMENT_DIM, SPACE_DIM, 2>
52{
53
62 template<class Archive>
63 void serialize(Archive & archive, const unsigned int version) // LCOV_EXCL_LINE
64 {
65 NEVER_REACHED; // If you remove this NEVER_REACHED, then:
66 // please remove the //LCOV exclude above and the ones around the default constructor in the .cpp too!
67
68
69// archive & mPurkinjeVoltageColumnId;
70// archive & boost::serialization::base_object<AbstractCardiacProblem<ELEMENT_DIM, SPACE_DIM, 2> >(*this);
71 }
72
73protected:
76
79
82
84 virtual void CreateMeshFromHeartConfig();
85
92
93public:
99
104
109
115 void WriteInfo(double time);
116
121 virtual void DefineWriterColumns(bool extending);
122
130 virtual void WriteOneStep(double time, Vec voltageVec);
131
132};
133
134
135#include "SerializationExportWrapper.hpp" // Must be last
138
139
140
141#endif // MONODOMAINPURKINJEPROBLEM_HPP_
#define NEVER_REACHED
gcov doesn't like this file...
#define EXPORT_TEMPLATE_CLASS2(CLASS, E, S)
void serialize(Archive &archive, const unsigned int version)
AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 2 > * CreateSolver()
virtual void WriteOneStep(double time, Vec voltageVec)
AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM > * CreateCardiacTissue()
friend class boost::serialization::access
virtual void DefineWriterColumns(bool extending)