AbstractPurkinjeCellFactory.hpp

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#ifndef ABSTRACTPURKINJECELLFACTORY_HPP_
#define ABSTRACTPURKINJECELLFACTORY_HPP_
 
#include "AbstractCardiacCellFactory.hpp"
#include "MixedDimensionMesh.hpp"
#include "FakeBathCell.hpp"
template<unsigned ELEMENT_DIM, unsigned SPACE_DIM = ELEMENT_DIM>
class AbstractPurkinjeCellFactory : public AbstractCardiacCellFactory<ELEMENT_DIM,SPACE_DIM>
{
private:
    void ReadJunctionsFile();
 
protected:
    MixedDimensionMesh<ELEMENT_DIM,SPACE_DIM>* mpMixedDimensionMesh;
 
    std::set<unsigned> mLocalPurkinjeNodes;
 
    std::map<unsigned, double> mJunctionMap;
 
    virtual AbstractCardiacCellInterface* CreatePurkinjeCellForTissueNode(Node<SPACE_DIM>* pNode,
                                                                          AbstractCardiacCellInterface* pCardiacCell)=0;
 
    void CreateJunction(const Node<SPACE_DIM>* pNode,
                        AbstractCardiacCellInterface* pPurkinjeCell,
                        AbstractCardiacCellInterface* pCardiacCell,
                        double resistance);
 
 
    void CreateJunctionFromFile(const Node<SPACE_DIM>* pNode,
                                AbstractCardiacCellInterface* pPurkinjeCell,
                                AbstractCardiacCellInterface* pCardiacCell);
 
 
public:
 
    /* Constructor does nothing */
    AbstractPurkinjeCellFactory();
 
 
    void SetMesh(AbstractTetrahedralMesh<ELEMENT_DIM,SPACE_DIM>* pMesh);
 
    AbstractCardiacCellInterface* CreatePurkinjeCellForNode(Node<SPACE_DIM>* pNode,
                                                            AbstractCardiacCellInterface* pCardiacCell);
 
    virtual void FinalisePurkinjeCellCreation(std::vector< AbstractCardiacCellInterface* >* pPurkinjeCellsDistributed,
                                              unsigned lo, unsigned hi)
    {
    }
 
    MixedDimensionMesh<ELEMENT_DIM,SPACE_DIM>* GetMixedDimensionMesh();
};
 
#endif // ABSTRACTPURKINJECELLFACTORY_HPP_