Chaste
Commit::baa90ac2819b962188b7562f2326be23c47859a7
DistributedVector.cpp
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/*
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Copyright (c) 2005-2024, University of Oxford.
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All rights reserved.
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University of Oxford means the Chancellor, Masters and Scholars of the
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University of Oxford, having an administrative office at Wellington
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Square, Oxford OX1 2JD, UK.
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This file is part of Chaste.
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Redistribution and use in source and binary forms, with or without
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modification, are permitted provided that the following conditions are met:
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* Redistributions of source code must retain the above copyright notice,
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this list of conditions and the following disclaimer.
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* Redistributions in binary form must reproduce the above copyright notice,
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this list of conditions and the following disclaimer in the documentation
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and/or other materials provided with the distribution.
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* Neither the name of the University of Oxford nor the names of its
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contributors may be used to endorse or promote products derived from this
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software without specific prior written permission.
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THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
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LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
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CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
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GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
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HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
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LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
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OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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*/
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#include "DistributedVector.hpp"
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#include "DistributedVectorFactory.hpp"
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bool
DistributedVector::IsGlobalIndexLocal
(
unsigned
globalIndex)
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{
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return
(
mLo
<=globalIndex && globalIndex<
mHi
);
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}
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DistributedVector::DistributedVector
(
Vec
vec,
DistributedVectorFactory
* pFactory,
bool
readOnly)
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: mVec(vec),
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mpFactory(pFactory),
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mReadOnly(readOnly)
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{
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assert(pFactory !=
nullptr
);
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// Set local copies of problem size, etc.
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mProblemSize
= pFactory->
GetProblemSize
();
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mLo
= pFactory->
GetLow
();
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mHi
= pFactory->
GetHigh
();
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if
(
mReadOnly
)
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{
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#if (PETSC_VERSION_MAJOR == 3 && PETSC_VERSION_MINOR >= 2)
//PETSc 3.2 or later
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// Request read-only access properly
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VecGetArrayRead(vec, (
const
PetscScalar**)&
mpVec
);
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#else
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// Silently ignore the request and hope nothing breaks
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VecGetArray(vec, &
mpVec
);
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#endif
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}
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else
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{
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VecGetArray(vec, &
mpVec
);
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}
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// Set mSizeMultiplier by reading the vec size.
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PetscInt
size;
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VecGetSize(vec, &size);
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mSizeMultiplier
= (
unsigned
) size /
mProblemSize
;
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assert ((
mSizeMultiplier
*
mProblemSize
) == (
unsigned
)size);
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}
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double
&
DistributedVector::operator[]
(
unsigned
globalIndex)
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{
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assert(
mSizeMultiplier
== 1);
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if
(
mLo
<=globalIndex && globalIndex<
mHi
)
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{
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return
mpVec
[globalIndex -
mLo
];
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}
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throw
DistributedVectorException
();
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}
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double
&
DistributedVector::operator[]
(
Iterator
index)
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{
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assert(
mSizeMultiplier
==1);
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return
mpVec
[index.Local];
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}
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void
DistributedVector::Restore
()
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{
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assert(
mReadOnly
==
false
);
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VecRestoreArray(
mVec
, &
mpVec
);
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#if (PETSC_VERSION_MAJOR == 3 && PETSC_VERSION_MINOR >= 2)
//PETSc 3.2 or later
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VecGetArray(mVec, &mpVec);
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#endif
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}
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// Iterator class
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bool
DistributedVector::Iterator::operator!=
(
const
Iterator
& rOther)
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{
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return
(
Global
!= rOther.
Global
);
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}
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DistributedVector::Iterator
&
DistributedVector::Iterator::operator++
()
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{
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Local++;
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Global++;
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return
(*
this
);
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}
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// Iterator creation
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DistributedVector::Iterator
DistributedVector::Begin
()
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{
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Iterator
index;
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index.Local = 0;
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index.Global =
mLo
;
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return
index;
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}
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DistributedVector::Iterator
DistributedVector::End
()
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{
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Iterator
index;
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index.Local =
mHi
-
mLo
;
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index.Global =
mHi
;
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return
index;
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}
DistributedVectorException
Definition
DistributedVectorException.hpp:45
DistributedVectorFactory
Definition
DistributedVectorFactory.hpp:58
DistributedVectorFactory::GetProblemSize
unsigned GetProblemSize() const
Definition
DistributedVectorFactory.hpp:220
DistributedVectorFactory::GetLow
unsigned GetLow() const
Definition
DistributedVectorFactory.hpp:212
DistributedVectorFactory::GetHigh
unsigned GetHigh() const
Definition
DistributedVectorFactory.hpp:204
DistributedVector::Iterator
Definition
DistributedVector.hpp:168
DistributedVector::Iterator::operator++
Iterator & operator++()
Definition
DistributedVector.cpp:115
DistributedVector::Iterator::Global
unsigned Global
Definition
DistributedVector.hpp:171
DistributedVector::Iterator::operator!=
bool operator!=(const Iterator &rOther)
Definition
DistributedVector.cpp:110
DistributedVector::mProblemSize
unsigned mProblemSize
Definition
DistributedVector.hpp:69
DistributedVector::Begin
Iterator Begin()
Definition
DistributedVector.cpp:124
DistributedVector::operator[]
double & operator[](unsigned globalIndex)
Definition
DistributedVector.cpp:78
DistributedVector::mpVec
double * mpVec
Definition
DistributedVector.hpp:80
DistributedVector::End
Iterator End()
Definition
DistributedVector.cpp:132
DistributedVector::IsGlobalIndexLocal
bool IsGlobalIndexLocal(unsigned globalIndex)
Definition
DistributedVector.cpp:39
DistributedVector::mHi
unsigned mHi
Definition
DistributedVector.hpp:66
DistributedVector::mVec
Vec mVec
Definition
DistributedVector.hpp:77
DistributedVector::Restore
void Restore()
Definition
DistributedVector.cpp:94
DistributedVector::DistributedVector
DistributedVector(Vec vec, DistributedVectorFactory *pFactory, bool readOnly=false)
Definition
DistributedVector.cpp:44
DistributedVector::mLo
unsigned mLo
Definition
DistributedVector.hpp:63
DistributedVector::mSizeMultiplier
unsigned mSizeMultiplier
Definition
DistributedVector.hpp:74
DistributedVector::mReadOnly
bool mReadOnly
Definition
DistributedVector.hpp:93
PetscInt
Vec
unsigned
global
src
parallel
DistributedVector.cpp
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