Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
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#include <CellLabelWriter.hpp>
Public Member Functions | |
CellLabelWriter () | |
double | GetCellDataForVtkOutput (CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
virtual void | VisitCell (CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
Public Member Functions inherited from AbstractCellWriter< ELEMENT_DIM, SPACE_DIM > | |
AbstractCellWriter (const std::string &rFileName) | |
virtual c_vector< double, SPACE_DIM > | GetVectorCellDataForVtkOutput (CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
bool | GetOutputScalarData () |
bool | GetOutputVectorData () |
void | SetVtkCellDataName (std::string vtkCellDataName) |
void | SetVtkVectorCellDataName (std::string vtkCellDataName) |
std::string | GetVtkCellDataName () |
std::string | GetVtkVectorCellDataName () |
Public Member Functions inherited from AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM > | |
AbstractCellBasedWriter (const std::string &rFileName) | |
virtual | ~AbstractCellBasedWriter () |
void | CloseFile () |
virtual void | OpenOutputFile (OutputFileHandler &rOutputFileHandler) |
void | OpenOutputFileForAppend (OutputFileHandler &rOutputFileHandler) |
virtual void | WriteTimeStamp () |
virtual void | WriteNewline () |
void | SetFileName (std::string fileName) |
std::string | GetFileName () |
Public Member Functions inherited from Identifiable | |
virtual | ~Identifiable () |
std::string | GetIdentifier () const |
Private Member Functions | |
template<class Archive > | |
void | serialize (Archive &archive, const unsigned int version) |
Friends | |
class | boost::serialization::access |
Additional Inherited Members | |
Protected Attributes inherited from AbstractCellWriter< ELEMENT_DIM, SPACE_DIM > | |
bool | mOutputScalarData |
bool | mOutputVectorData |
std::string | mVtkCellDataName |
std::string | mVtkVectorCellDataName |
Protected Attributes inherited from AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM > | |
std::string | mFileName |
out_stream | mpOutStream |
A class written using the visitor pattern for writing cell labels to file.
The output file is called results.vizlabels by default. If VTK is switched on, then the writer also specifies the VTK output for each cell, which is stored in the VTK cell data "Cell labels" by default.
Definition at line 51 of file CellLabelWriter.hpp.
CellLabelWriter< ELEMENT_DIM, SPACE_DIM >::CellLabelWriter | ( | ) |
Default constructor.
Definition at line 41 of file CellLabelWriter.cpp.
References AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >::mVtkCellDataName.
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virtual |
Get a double associated with a cell. This method reduces duplication of code between the methods VisitCell() and AddVtkData().
By default this method returns a DOUBLE_UNSET, but it may be overridden in subclasses
pCell | a cell |
pCellPopulation | a pointer to the cell population owning the cell. |
Reimplemented from AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 48 of file CellLabelWriter.cpp.
References CellPropertyCollection::GetProperties(), and CellPropertyCollection::GetProperty().
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inlineprivate |
Serialize the object and its member variables.
archive | the archive |
version | the current version of this class |
Definition at line 63 of file CellLabelWriter.hpp.
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virtual |
Overridden VisitCell() method.
Visit a cell and write its label.
Outputs a line of space-separated values of the form: ...[cell label] [location index] [x-pos] [y-pos] [z-pos] ... with [y-pos] and [z-pos] included for 2 and 3 dimensional simulations, respectively.
This is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
pCell | a cell |
pCellPopulation | a pointer to the cell population owning the cell |
Implements AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 61 of file CellLabelWriter.cpp.
References AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetLocationIndexUsingCell(), AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetLocationOfCellCentre(), CellPropertyCollection::GetProperties(), and CellPropertyCollection::GetProperty().
Needed for serialization.
Definition at line 55 of file CellLabelWriter.hpp.