Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
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#include <CryptSimulationBoundaryCondition.hpp>
Public Member Functions | |
CryptSimulationBoundaryCondition (AbstractCellPopulation< DIM > *pCellPopulation) | |
void | ImposeBoundaryCondition (const std::map< Node< DIM > *, c_vector< double, DIM > > &rOldLocations) |
bool | VerifyBoundaryCondition () |
void | SetUseJiggledBottomCells (bool useJiggledBottomCells) |
bool | GetUseJiggledBottomCells () |
void | OutputCellPopulationBoundaryConditionParameters (out_stream &rParamsFile) |
Public Member Functions inherited from AbstractCellPopulationBoundaryCondition< DIM > | |
AbstractCellPopulationBoundaryCondition (AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > *pCellPopulation) | |
virtual | ~AbstractCellPopulationBoundaryCondition () |
virtual void | ImposeBoundaryCondition (const std::map< Node< ELEMENT_DIM > *, c_vector< double, ELEMENT_DIM > > &rOldLocations)=0 |
const AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > * | GetCellPopulation () const |
void | OutputCellPopulationBoundaryConditionInfo (out_stream &rParamsFile) |
Public Member Functions inherited from Identifiable | |
virtual | ~Identifiable () |
std::string | GetIdentifier () const |
Private Member Functions | |
template<class Archive > | |
void | serialize (Archive &archive, const unsigned int version) |
Private Attributes | |
bool | mUseJiggledBottomCells |
Friends | |
class | boost::serialization::access |
Additional Inherited Members | |
Protected Attributes inherited from AbstractCellPopulationBoundaryCondition< DIM > | |
AbstractCellPopulation< ELEMENT_DIM, ELEMENT_DIM > * | mpCellPopulation |
A boundary condition class for use with CryptSimulation2d, which pins stem cells in the absence of a Wnt stimulus, and optionally prevents cells moving below the y=0 boundary via random jiggling.
Definition at line 51 of file CryptSimulationBoundaryCondition.hpp.
CryptSimulationBoundaryCondition< DIM >::CryptSimulationBoundaryCondition | ( | AbstractCellPopulation< DIM > * | pCellPopulation | ) |
Constructor.
pCellPopulation | pointer to the cell population |
Definition at line 43 of file CryptSimulationBoundaryCondition.cpp.
bool CryptSimulationBoundaryCondition< DIM >::GetUseJiggledBottomCells | ( | ) |
Definition at line 194 of file CryptSimulationBoundaryCondition.cpp.
void CryptSimulationBoundaryCondition< DIM >::ImposeBoundaryCondition | ( | const std::map< Node< DIM > *, c_vector< double, DIM > > & | rOldLocations | ) |
Overridden ImposeBoundaryCondition() method.
Apply the cell population boundary conditions.
rOldLocations | the node locations before any boundary conditions are applied |
Definition at line 50 of file CryptSimulationBoundaryCondition.cpp.
References WntConcentration< DIM >::Destroy(), WntConcentration< DIM >::Instance(), RandomNumberGenerator::Instance(), WntConcentration< DIM >::IsWntSetUp(), RandomNumberGenerator::ranf(), Node< SPACE_DIM >::rGetLocation(), and Node< SPACE_DIM >::rGetModifiableLocation().
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virtual |
Overridden OutputCellPopulationBoundaryConditionParameters() method. Output cell population boundary condition parameters to file.
rParamsFile | the file stream to which the parameters are output |
Implements AbstractCellPopulationBoundaryCondition< DIM >.
Definition at line 200 of file CryptSimulationBoundaryCondition.cpp.
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inlineprivate |
Serialize the object and its member variables.
archive | the archive |
version | the current version of this class |
Definition at line 70 of file CryptSimulationBoundaryCondition.hpp.
References CryptSimulationBoundaryCondition< DIM >::mUseJiggledBottomCells.
void CryptSimulationBoundaryCondition< DIM >::SetUseJiggledBottomCells | ( | bool | useJiggledBottomCells | ) |
Set method for mUseJiggledBottomCells
useJiggledBottomCells | whether to jiggle the cells on the bottom surface |
Definition at line 188 of file CryptSimulationBoundaryCondition.cpp.
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virtual |
Overridden VerifyBoundaryCondition() method. Verify the boundary conditions have been applied. This is called after ImposeBoundaryCondition() to ensure the condition is still satisfied.
Implements AbstractCellPopulationBoundaryCondition< DIM >.
Definition at line 158 of file CryptSimulationBoundaryCondition.cpp.
References Node< SPACE_DIM >::rGetLocation().
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friend |
Needed for serialization.
Definition at line 62 of file CryptSimulationBoundaryCondition.hpp.
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private |
Whether to jiggle the cells on the bottom surface, initialised to false in the constructor.
Definition at line 59 of file CryptSimulationBoundaryCondition.hpp.
Referenced by CryptSimulationBoundaryCondition< DIM >::serialize().