Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
RandomNumberGenerator.cpp
1/*
2
3Copyright (c) 2005-2024, University of Oxford.
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10This file is part of Chaste.
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23THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
24AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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34*/
35
36#include "RandomNumberGenerator.hpp"
37#include "Exception.hpp"
38
39#if BOOST_VERSION < 106400 // #2893
40// Forward compatibility with Boost 1.64 onwards
43#endif
44
46
48 : mMersenneTwisterGenerator(0u),
49 mGenerateUnitReal(mMersenneTwisterGenerator, boost::uniform_real<>()),
50#if BOOST_VERSION < 106400 // #2585 and #2893
51 mGenerateStandardNormal(mMersenneTwisterGenerator, boost::random::normal_distribution_v165<>(0.0, 1.0))
52#else
53 mGenerateStandardNormal(mMersenneTwisterGenerator, boost::normal_distribution<>(0.0, 1.0))
54#endif
55{
56 assert(mpInstance == nullptr); // Ensure correct serialization
57}
58
67
69{
70 if (mpInstance)
71 {
72 delete mpInstance;
73 mpInstance = nullptr;
74 }
75}
76
77unsigned RandomNumberGenerator::randMod(unsigned base)
78{
79 assert(base > 0u);
80 /*
81 * The contents of this method are copied out of
82 * boost/include/boost/random/uniform_smallint.hpp lines 235 - 255
83 * as of v 1.48 (preserved at least as far as 1.51).
84 * to make sure we get the same
85 * result on earlier versions of boost.
86 *
87 * It was then simplified as we know '_min' is zero, '_max' is 'base-1u'
88 * and all the types are unsigneds.
89 */
90
91 // equivalent to (eng() - eng.min()) % (_max - _min + 1) + _min,
92 // but guarantees no overflow.
93 unsigned base_range = boost::random::detail::subtract<unsigned>()((mMersenneTwisterGenerator.max)(), (mMersenneTwisterGenerator.min)());
94 unsigned val = boost::random::detail::subtract<unsigned>()(mMersenneTwisterGenerator(), (mMersenneTwisterGenerator.min)());
95
96 if (base - 1u >= base_range)
97 {
98 // This was in the original boost file for when '_min' is large, but here it is zero so
99 // we shouldn't ever reach this.
101 //return val;
102 }
103 else
104 {
105 return (val % base);
106 }
107}
108
110{
111 return mGenerateUnitReal();
112}
113
118
119double RandomNumberGenerator::NormalRandomDeviate(double mean, double stdDev)
120{
121 return stdDev * StandardNormalRandomDeviate() + mean;
122}
123
124double RandomNumberGenerator::GammaRandomDeviate(double shape, double scale)
125{
126// make a gamma distribution and `merge' this distribution with our random number generator
127
128#if BOOST_VERSION < 106400
130 boost::variate_generator<boost::mt19937&, boost::random::gamma_distribution_v165<> > var_gamma(mMersenneTwisterGenerator, gd);
131#else
132 boost::gamma_distribution<> gd(shape);
133 boost::variate_generator<boost::mt19937&, boost::gamma_distribution<> > var_gamma(mMersenneTwisterGenerator, gd);
134#endif
135 return scale * var_gamma();
136}
137
139{
140// make an exponential distribution and `merge' this distribution with our random number generator
141
142#if BOOST_VERSION < 106400
144 boost::variate_generator<boost::mt19937&, boost::random::exponential_distribution_v165<> > var_exponential(mMersenneTwisterGenerator, ed);
145#else
146 boost::exponential_distribution<> ed(scale);
147 boost::variate_generator<boost::mt19937&, boost::exponential_distribution<> > var_exponential(mMersenneTwisterGenerator, ed);
148#endif
149 // return the random number
150 return var_exponential();
151}
152
154{
155 mMersenneTwisterGenerator.seed(seed);
156
157 // Because this does some Box-Muller type thing it remembers if you don't reset it - see #2633
158 mGenerateStandardNormal.distribution().reset();
159
160 // Probably don't need to do this, but it probably is good practice!
161 mGenerateUnitReal.distribution().reset();
162}
163
164void RandomNumberGenerator::Shuffle(unsigned num, std::vector<unsigned>& rValues)
165{
166 rValues.resize(num);
167 for (unsigned i = 0; i < num; i++)
168 {
169 rValues[i] = i;
170 }
171
172 for (unsigned end = num - 1; end > 0; end--)
173 {
174 // Pick a random integer from {0,..,end}
175 unsigned k = RandomNumberGenerator::Instance()->randMod(end + 1);
176 unsigned temp = rValues[end];
177 rValues[end] = rValues[k];
178 rValues[k] = temp;
179 }
180}
#define NEVER_REACHED
boost::variate_generator< boost::mt19937 &, boost::uniform_real<> > mGenerateUnitReal
double NormalRandomDeviate(double mean, double stdDev)
double GammaRandomDeviate(double shape, double scale)
static RandomNumberGenerator * Instance()
void Shuffle(std::vector< boost::shared_ptr< T > > &rValues)
unsigned randMod(unsigned base)
double ExponentialRandomDeviate(double scale)
static RandomNumberGenerator * mpInstance
boost::mt19937 mMersenneTwisterGenerator
boost::variate_generator< boost::mt19937 &, boost::random::normal_distribution_v165<> > mGenerateStandardNormal