Chaste Commit::1fd4e48e3990e67db148bc1bc4cf6991a0049d0c
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#include <CellRosetteRankWriter.hpp>
Public Member Functions | |
CellRosetteRankWriter () | |
double | GetCellDataForVtkOutput (CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
virtual void | VisitCell (CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
Public Member Functions inherited from AbstractCellWriter< ELEMENT_DIM, SPACE_DIM > | |
AbstractCellWriter (const std::string &rFileName) | |
virtual c_vector< double, SPACE_DIM > | GetVectorCellDataForVtkOutput (CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
bool | GetOutputScalarData () |
bool | GetOutputVectorData () |
void | SetVtkCellDataName (std::string vtkCellDataName) |
void | SetVtkVectorCellDataName (std::string vtkCellDataName) |
std::string | GetVtkCellDataName () |
std::string | GetVtkVectorCellDataName () |
Public Member Functions inherited from AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM > | |
AbstractCellBasedWriter (const std::string &rFileName) | |
virtual | ~AbstractCellBasedWriter () |
void | CloseFile () |
virtual void | OpenOutputFile (OutputFileHandler &rOutputFileHandler) |
void | OpenOutputFileForAppend (OutputFileHandler &rOutputFileHandler) |
virtual void | WriteTimeStamp () |
virtual void | WriteNewline () |
void | SetFileName (std::string fileName) |
std::string | GetFileName () |
Public Member Functions inherited from Identifiable | |
virtual | ~Identifiable () |
std::string | GetIdentifier () const |
Private Member Functions | |
template<class Archive > | |
void | serialize (Archive &archive, const unsigned int version) |
Friends | |
class | boost::serialization::access |
Additional Inherited Members | |
Protected Attributes inherited from AbstractCellWriter< ELEMENT_DIM, SPACE_DIM > | |
bool | mOutputScalarData |
bool | mOutputVectorData |
std::string | mVtkCellDataName |
std::string | mVtkVectorCellDataName |
Protected Attributes inherited from AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM > | |
std::string | mFileName |
out_stream | mpOutStream |
A class written using the visitor pattern for writing cell volumes (in 3D, or areas in 2D) to file.
The output file is called cellrosetterank.dat by default. If VTK is switched on, then the writer also specifies the VTK output for each cell, which is stored in the VTK cell data "Cell rosette rank" by default.
Definition at line 51 of file CellRosetteRankWriter.hpp.
CellRosetteRankWriter< ELEMENT_DIM, SPACE_DIM >::CellRosetteRankWriter | ( | ) |
Default constructor.
Definition at line 41 of file CellRosetteRankWriter.cpp.
References AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >::mVtkCellDataName.
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virtual |
Overridden GetCellDataForVtkOutput() method.
Get an unsigned integer associated with a cell. This method reduces duplication of code between the methods VisitCell() and AddVtkData().
pCell | a cell |
pCellPopulation | a pointer to the cell population owning the cell |
Reimplemented from AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 48 of file CellRosetteRankWriter.cpp.
References EXCEPTION, and VertexBasedCellPopulation< DIM >::GetRosetteRankOfCell().
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inlineprivate |
Serialize the object and its member variables.
archive | the archive |
version | the current version of this class |
Definition at line 63 of file CellRosetteRankWriter.hpp.
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virtual |
Overridden VisitCell() method.
Visit a cell and write its rosette rank.
Outputs a line of space-separated values of the form: ...[location index] [cell id] [x-pos] [y-pos] [z-pos] [cell rosette rank] ... with [y-pos] and [z-pos] included for 2 and 3 dimensional simulations, respectively.
This is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
pCell | a cell |
pCellPopulation | a pointer to the cell population owning the cell |
Implements AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 65 of file CellRosetteRankWriter.cpp.
References AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetLocationIndexUsingCell(), and AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetLocationOfCellCentre().
Needed for serialization.
Definition at line 55 of file CellRosetteRankWriter.hpp.