Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
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#include <Hdf5ToTxtConverter.hpp>
Public Member Functions | |
Hdf5ToTxtConverter (const FileFinder &rInputDirectory, const std::string &rFileBaseName, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh) | |
Public Member Functions inherited from AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM > | |
AbstractHdf5Converter (const FileFinder &rInputDirectory, const std::string &rFileBaseName, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh, const std::string &rSubdirectoryName, unsigned precision) | |
void | WriteInfoFile () |
~AbstractHdf5Converter () | |
std::string | GetSubdirectory () |
Additional Inherited Members | |
Protected Member Functions inherited from AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM > | |
bool | MoveOntoNextDataset () |
Protected Attributes inherited from AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM > | |
const FileFinder & | mrH5Folder |
boost::shared_ptr< Hdf5DataReader > | mpReader |
unsigned | mNumVariables |
std::string | mFileBaseName |
std::vector< std::string > | mDatasetNames |
unsigned | mOpenDatasetIndex |
AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > * | mpMesh |
OutputFileHandler * | mpOutputFileHandler |
std::string | mRelativeSubdirectory |
unsigned | mPrecision |
This class converts from Hdf5 format to a .txt format that is readable by Matlab.
There is one output file per variable per timestep, giving the values of that variable at that time over each of the nodes.
Definition at line 49 of file Hdf5ToTxtConverter.hpp.
Hdf5ToTxtConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToTxtConverter | ( | const FileFinder & | rInputDirectory, |
const std::string & | rFileBaseName, | ||
AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > * | pMesh | ||
) |
Constructor, which does the conversion and writes the .txt file.
rInputDirectory | The input directory, where the .h5 file has been written. |
rFileBaseName | The base name of the data file. |
pMesh | Pointer to the mesh. |
Definition at line 47 of file Hdf5ToTxtConverter.cpp.
References PetscTools::AmMaster(), DistributedVectorFactory::CreateVec(), PetscTools::Destroy(), AbstractMesh< ELEMENT_DIM, SPACE_DIM >::GetDistributedVectorFactory(), AbstractMesh< ELEMENT_DIM, SPACE_DIM >::GetNumNodes(), ReplicatableVector::GetSize(), AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mNumVariables, AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mpReader, AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mRelativeSubdirectory, OutputFileHandler::OpenOutputFile(), and ReplicatableVector::ReplicatePetscVector().