#include <ImmersedBoundaryNeighbourNumberWriter.hpp>

Inheritance diagram for ImmersedBoundaryNeighbourNumberWriter< ELEMENT_DIM, SPACE_DIM >:

Collaboration diagram for ImmersedBoundaryNeighbourNumberWriter< ELEMENT_DIM, SPACE_DIM >:

Public Member Functions
	ImmersedBoundaryNeighbourNumberWriter ()

double	GetCellDataForVtkOutput (CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)

virtual void	VisitCell (CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)

Public Member Functions inherited from AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >
	AbstractCellWriter (const std::string &rFileName)

virtual c_vector< double, SPACE_DIM >	GetVectorCellDataForVtkOutput (CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)

bool	GetOutputScalarData ()

bool	GetOutputVectorData ()

void	SetVtkCellDataName (std::string vtkCellDataName)

void	SetVtkVectorCellDataName (std::string vtkCellDataName)

std::string	GetVtkCellDataName ()

std::string	GetVtkVectorCellDataName ()

Public Member Functions inherited from AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >
	AbstractCellBasedWriter (const std::string &rFileName)

virtual	~AbstractCellBasedWriter ()

void	CloseFile ()

virtual void	OpenOutputFile (OutputFileHandler &rOutputFileHandler)

void	OpenOutputFileForAppend (OutputFileHandler &rOutputFileHandler)

virtual void	WriteTimeStamp ()

virtual void	WriteNewline ()

void	SetFileName (std::string fileName)

std::string	GetFileName ()

Public Member Functions inherited from Identifiable
virtual	~Identifiable ()

std::string	GetIdentifier () const

Private Member Functions
template<class Archive >
void	serialize (Archive &archive, const unsigned int version)

Friends
class	boost::serialization::access

Additional Inherited Members
Protected Attributes inherited from AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >
bool	mOutputScalarData

bool	mOutputVectorData

std::string	mVtkCellDataName

std::string	mVtkVectorCellDataName

Protected Attributes inherited from AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >
std::string	mFileName

out_stream	mpOutStream

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class ImmersedBoundaryNeighbourNumberWriter< ELEMENT_DIM, SPACE_DIM >

A class written using the visitor pattern for writing whether a cell is on the boundary of an immersed boundary cell population.

The output file is called ib_neighbournumber.dat by default. If VTK is switched on, then the writer also specifies the VTK output for each cell, which is stored in the VTK cell data "Boundary cell" by default.

Definition at line 52 of file ImmersedBoundaryNeighbourNumberWriter.hpp.

Constructor & Destructor Documentation

◆ ImmersedBoundaryNeighbourNumberWriter()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

ImmersedBoundaryNeighbourNumberWriter< ELEMENT_DIM, SPACE_DIM >::ImmersedBoundaryNeighbourNumberWriter ( )

Default constructor.

Definition at line 41 of file ImmersedBoundaryNeighbourNumberWriter.cpp.

References AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >::mVtkCellDataName.

Member Function Documentation

◆ GetCellDataForVtkOutput()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

double ImmersedBoundaryNeighbourNumberWriter< ELEMENT_DIM, SPACE_DIM >::GetCellDataForVtkOutput	(	CellPtr	pCell,
		AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *	pCellPopulation
	)

virtual

Overridden GetCellDataForVtkOutput() method.

Get an unsigned integer associated with a cell. This method reduces duplication of code between the methods VisitCell() and AddVtkData().

Parameters

pCell	a cell
pCellPopulation	a pointer to the cell population owning the cell

Returns: data associated with the cell

Reimplemented from AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 48 of file ImmersedBoundaryNeighbourNumberWriter.cpp.

References AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetNeighbouringLocationIndices().

◆ serialize()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

template<class Archive >

void ImmersedBoundaryNeighbourNumberWriter< ELEMENT_DIM, SPACE_DIM >::serialize	(	Archive &	archive,
		const unsigned int	version
	)

inlineprivate

Serialize the object and its member variables.

Parameters

archive	the archive
version	the current version of this class

Definition at line 64 of file ImmersedBoundaryNeighbourNumberWriter.hpp.

◆ VisitCell()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void ImmersedBoundaryNeighbourNumberWriter< ELEMENT_DIM, SPACE_DIM >::VisitCell	(	CellPtr	pCell,
		AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *	pCellPopulation
	)

virtual

Overridden VisitCell() method.

Visit a cell and write its number of neighbours.

Outputs a line of space-separated values of the form: ...[location index] [cell id] [x-pos] [y-pos] [z-pos] [num neighbours] ... with [y-pos] and [z-pos] included for 2 and 3 dimensional simulations, respectively.

This is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.

Parameters