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Chaste Commit::333233612e3dcc941d260418acd7b5ccdc30390e
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#include <VoronoiDataWriter.hpp>
Public Member Functions | |
VoronoiDataWriter () | |
virtual void | Visit (MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
virtual void | Visit (CaBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
virtual void | Visit (NodeBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
virtual void | Visit (PottsBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
virtual void | Visit (VertexBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
virtual void | Visit (ImmersedBoundaryCellPopulation< SPACE_DIM > *pCellPopulation) |
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AbstractCellPopulationWriter (const std::string &rFileName) | |
virtual void | WriteHeader (AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
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AbstractCellBasedWriter (const std::string &rFileName) | |
virtual | ~AbstractCellBasedWriter () |
void | CloseFile () |
virtual void | OpenOutputFile (OutputFileHandler &rOutputFileHandler) |
void | OpenOutputFileForAppend (OutputFileHandler &rOutputFileHandler) |
virtual void | WriteTimeStamp () |
virtual void | WriteNewline () |
void | SetFileName (std::string fileName) |
std::string | GetFileName () |
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virtual | ~Identifiable () |
std::string | GetIdentifier () const |
Private Member Functions | |
template<class Archive > | |
void | serialize (Archive &archive, const unsigned int version) |
Friends | |
class | boost::serialization::access |
Additional Inherited Members | |
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std::string | mFileName |
out_stream | mpOutStream |
A class written using the visitor pattern for writing Voronoi data from a cell population to file.
The output file is called voronoi.dat by default.
Definition at line 49 of file VoronoiDataWriter.hpp.
VoronoiDataWriter< ELEMENT_DIM, SPACE_DIM >::VoronoiDataWriter | ( | ) |
Default constructor.
Definition at line 46 of file VoronoiDataWriter.cpp.
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inlineprivate |
Serialize the object and its member variables.
archive | the archive |
version | the current version of this class |
Definition at line 61 of file VoronoiDataWriter.hpp.
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virtual |
Visit the population and write the data.
This is an empty dummy function, since this class is defined for use with a MeshBasedCellPopulation only.
pCellPopulation | a pointer to the CaBasedCellPopulation to visit. |
Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 90 of file VoronoiDataWriter.cpp.
References EXCEPTION.
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virtual |
Visit the population and write the data.
This is an empty dummy function, since this class is defined for use with a MeshBasedCellPopulation only.
pCellPopulation | a pointer to the ImmersedBoundaryCellPopulation to visit. |
Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 114 of file VoronoiDataWriter.cpp.
References EXCEPTION.
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virtual |
Visit the MeshBasedCellPopulation and write the index and location of each node, as well as the volume and surface area (area and perimeter in 2 dimensions) of the corresponding element in the dual Voronoi tessellation.
Outputs a line of space-separated values of the form: ...[node index] [node x-pos] [node y-pos] [node z-pos] [elem volume] [elem surface area] ...
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
pCellPopulation | a pointer to the MeshBasedCellPopulation to visit. |
Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 52 of file VoronoiDataWriter.cpp.
References VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetDelaunayNodeIndexCorrespondingToVoronoiElementIndex(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetElementIteratorBegin(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetElementIteratorEnd(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetSurfaceAreaOfElement(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetVolumeOfElement(), and NEVER_REACHED.
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virtual |
Visit the population and write the data.
This is an empty dummy function, since this class is defined for use with a MeshBasedCellPopulation only.
pCellPopulation | a pointer to the NodeBasedCellPopulation to visit. |
Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 96 of file VoronoiDataWriter.cpp.
References EXCEPTION.
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virtual |
Visit the population and write the data.
This is an empty dummy function, since this class is defined for use with a MeshBasedCellPopulation only.
pCellPopulation | a pointer to the PottsBasedCellPopulation to visit. |
Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 102 of file VoronoiDataWriter.cpp.
References EXCEPTION.
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virtual |
Visit the population and write the data.
This is an empty dummy function, since this class is defined for use with a MeshBasedCellPopulation only.
pCellPopulation | a pointer to the VertexBasedCellPopulation to visit. |
Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 108 of file VoronoiDataWriter.cpp.
References EXCEPTION.
Needed for serialization.
Definition at line 53 of file VoronoiDataWriter.hpp.