Chaste Commit::ca8ccdedf819b6e02855bc0e8e6f50bdecbc5208
VoronoiDataWriter.cpp
1/*
2
3Copyright (c) 2005-2024, University of Oxford.
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34*/
35
36#include "VoronoiDataWriter.hpp"
37#include "AbstractCellPopulation.hpp"
38#include "MeshBasedCellPopulation.hpp"
39#include "CaBasedCellPopulation.hpp"
40#include "NodeBasedCellPopulation.hpp"
41#include "PottsBasedCellPopulation.hpp"
42#include "VertexBasedCellPopulation.hpp"
43#include "ImmersedBoundaryCellPopulation.hpp"
44
45template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
50
51template <unsigned ELEMENT_DIM, unsigned SPACE_DIM>
53 [[maybe_unused]] MeshBasedCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation) // [[maybe_unused]] due to unused-but-set-parameter warning in GCC 7,8,9
54{
55 if constexpr ((SPACE_DIM == 2) || (SPACE_DIM == 3))
56 {
57 VertexMesh<ELEMENT_DIM,SPACE_DIM>* voronoi_tesselation = pCellPopulation->GetVoronoiTessellation();
58
59 // Loop over elements of voronoi_tesselation
60 for (typename VertexMesh<ELEMENT_DIM,SPACE_DIM>::VertexElementIterator elem_iter = voronoi_tesselation->GetElementIteratorBegin();
61 elem_iter != voronoi_tesselation->GetElementIteratorEnd();
62 ++elem_iter)
63 {
64 // Get index of this element in voronoi_tesselation
65 unsigned elem_index = elem_iter->GetIndex();
66
67 // Get the index of the corresponding node in mrMesh
68 unsigned node_index = voronoi_tesselation->GetDelaunayNodeIndexCorrespondingToVoronoiElementIndex(elem_index);
69
70 // Write node index and location to file
71 *this->mpOutStream << node_index << " ";
72 c_vector<double, SPACE_DIM> node_location = pCellPopulation->GetNode(node_index)->rGetLocation();
73 for (unsigned i=0; i<SPACE_DIM; i++)
74 {
75 *this->mpOutStream << node_location[i] << " ";
76 }
77
78 double cell_volume = voronoi_tesselation->GetVolumeOfElement(elem_index);
79 double cell_surface_area = voronoi_tesselation->GetSurfaceAreaOfElement(elem_index);
80 *this->mpOutStream << cell_volume << " " << cell_surface_area << " ";
81 }
82 }
83 else
84 {
86 }
87}
88
89template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
91{
92 EXCEPTION("VoronoiDataWriter cannot be used with a CaBasedCellPopulation");
93}
94
95template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
97{
98 EXCEPTION("VoronoiDataWriter cannot be used with a NodeBasedCellPopulation");
99}
100
101template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
103{
104 EXCEPTION("VoronoiDataWriter cannot be used with a PottsBasedCellPopulation");
105}
106
107template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
109{
110 EXCEPTION("VoronoiDataWriter cannot be used with a VertexBasedCellPopulation");
111}
112
113template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
115{
116 EXCEPTION("VoronoiDataWriter cannot be used with a ImmersedBoundaryCellPopulation");
117}
118
119// Explicit instantiation
120template class VoronoiDataWriter<1,1>;
121template class VoronoiDataWriter<1,2>;
122template class VoronoiDataWriter<2,2>;
123template class VoronoiDataWriter<1,3>;
124template class VoronoiDataWriter<2,3>;
125template class VoronoiDataWriter<3,3>;
126
128// Declare identifier for the serializer
#define EXCEPTION(message)
#define NEVER_REACHED
#define EXPORT_TEMPLATE_CLASS_ALL_DIMS(CLASS)
VertexElementIterator GetElementIteratorEnd()
virtual double GetSurfaceAreaOfElement(unsigned index)
VertexElementIterator GetElementIteratorBegin(bool skipDeletedElements=true)
unsigned GetDelaunayNodeIndexCorrespondingToVoronoiElementIndex(unsigned elementIndex)
virtual double GetVolumeOfElement(unsigned index)
virtual void Visit(MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)