![]() |
Chaste Commit::333233612e3dcc941d260418acd7b5ccdc30390e
|
#include <NonCachedTetrahedralMesh.hpp>
Public Member Functions | |
void | RefreshJacobianCachedData () |
void | GetJacobianForElement (unsigned elementIndex, c_matrix< double, SPACE_DIM, SPACE_DIM > &rJacobian, double &rJacobianDeterminant) const |
void | GetInverseJacobianForElement (unsigned elementIndex, c_matrix< double, SPACE_DIM, ELEMENT_DIM > &rJacobian, double &rJacobianDeterminant, c_matrix< double, ELEMENT_DIM, SPACE_DIM > &rInverseJacobian) const |
void | GetWeightedDirectionForElement (unsigned elementIndex, c_vector< double, SPACE_DIM > &rWeightedDirection, double &rJacobianDeterminant) const |
void | GetWeightedDirectionForBoundaryElement (unsigned elementIndex, c_vector< double, SPACE_DIM > &rWeightedDirection, double &rJacobianDeterminant) const |
![]() | |
TetrahedralMesh () | |
void | ConstructFromMeshReader (AbstractMeshReader< ELEMENT_DIM, SPACE_DIM > &rMeshReader) |
void | ReadNodesPerProcessorFile (const std::string &rNodesPerProcessorFile) |
bool | CheckIsConforming () |
double | GetVolume () |
double | GetSurfaceArea () |
void | RefreshMesh () |
void | PermuteNodes () |
void | PermuteNodes (const std::vector< unsigned > &perm) |
unsigned | GetContainingElementIndexWithInitialGuess (const ChastePoint< SPACE_DIM > &rTestPoint, unsigned startingElementGuess, bool strict=false) |
unsigned | GetNearestElementIndex (const ChastePoint< SPACE_DIM > &rTestPoint) |
std::vector< unsigned > | GetContainingElementIndices (const ChastePoint< SPACE_DIM > &rTestPoint) |
virtual void | Clear () |
double | GetAngleBetweenNodes (unsigned indexA, unsigned indexB) |
EdgeIterator | EdgesBegin () |
EdgeIterator | EdgesEnd () |
![]() | |
ElementIterator | GetElementIteratorBegin (bool skipDeletedElements=true) |
ElementIterator | GetElementIteratorEnd () |
AbstractTetrahedralMesh () | |
virtual | ~AbstractTetrahedralMesh () |
virtual unsigned | GetNumElements () const |
virtual unsigned | GetNumLocalElements () const |
virtual unsigned | GetNumBoundaryElements () const |
virtual unsigned | GetNumLocalBoundaryElements () const |
unsigned | GetNumAllElements () const |
unsigned | GetNumAllBoundaryElements () const |
virtual unsigned | GetNumCableElements () const |
virtual unsigned | GetNumVertices () const |
virtual unsigned | GetMaximumNodeIndex () |
Element< ELEMENT_DIM, SPACE_DIM > * | GetElement (unsigned index) const |
BoundaryElement< ELEMENT_DIM-1, SPACE_DIM > * | GetBoundaryElement (unsigned index) const |
void | ConstructFromMesh (AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > &rOtherMesh) |
BoundaryElementIterator | GetBoundaryElementIteratorBegin () const |
BoundaryElementIterator | GetBoundaryElementIteratorEnd () const |
void | CheckOutwardNormals () |
virtual void | ConstructLinearMesh (unsigned width) |
virtual void | ConstructRectangularMesh (unsigned width, unsigned height, bool stagger=true) |
virtual void | ConstructCuboid (unsigned width, unsigned height, unsigned depth) |
void | ConstructRegularSlabMesh (double spaceStep, double width, double height=0, double depth=0) |
void | ConstructRegularSlabMeshWithDimensionSplit (unsigned dimension, double spaceStep, double width, double height=0, double depth=0) |
virtual bool | CalculateDesignatedOwnershipOfBoundaryElement (unsigned faceIndex) |
virtual bool | CalculateDesignatedOwnershipOfElement (unsigned elementIndex) |
unsigned | CalculateMaximumNodeConnectivityPerProcess () const |
virtual void | GetHaloNodeIndices (std::vector< unsigned > &rHaloIndices) const |
void | CalculateNodeExchange (std::vector< std::vector< unsigned > > &rNodesToSendPerProcess, std::vector< std::vector< unsigned > > &rNodesToReceivePerProcess) |
virtual c_vector< double, 2 > | CalculateMinMaxEdgeLengths () |
unsigned | GetContainingElementIndex (const ChastePoint< SPACE_DIM > &rTestPoint, bool strict=false, std::set< unsigned > testElements=std::set< unsigned >(), bool onlyTryWithTestElements=false) |
unsigned | GetNearestElementIndexFromTestElements (const ChastePoint< SPACE_DIM > &rTestPoint, std::set< unsigned > testElements) |
![]() | |
NodeIterator | GetNodeIteratorBegin (bool skipDeletedNodes=true) |
NodeIterator | GetNodeIteratorEnd () |
AbstractMesh () | |
virtual | ~AbstractMesh () |
virtual unsigned | GetNumNodes () const |
unsigned | GetNumBoundaryNodes () const |
virtual unsigned | GetNumAllNodes () const |
unsigned | GetNumNodeAttributes () const |
Node< SPACE_DIM > * | GetNode (unsigned index) const |
virtual Node< SPACE_DIM > * | GetNodeOrHaloNode (unsigned index) const |
Node< SPACE_DIM > * | GetNodeFromPrePermutationIndex (unsigned index) const |
virtual DistributedVectorFactory * | GetDistributedVectorFactory () |
virtual void | SetDistributedVectorFactory (DistributedVectorFactory *pFactory) |
BoundaryNodeIterator | GetBoundaryNodeIteratorBegin () const |
BoundaryNodeIterator | GetBoundaryNodeIteratorEnd () const |
std::string | GetMeshFileBaseName () const |
bool | IsMeshOnDisk () const |
const std::vector< unsigned > & | rGetNodePermutation () const |
virtual c_vector< double, SPACE_DIM > | GetVectorFromAtoB (const c_vector< double, SPACE_DIM > &rLocationA, const c_vector< double, SPACE_DIM > &rLocationB) |
double | GetDistanceBetweenNodes (unsigned indexA, unsigned indexB) |
virtual double | GetWidth (const unsigned &rDimension) const |
virtual ChasteCuboid< SPACE_DIM > | CalculateBoundingBox () const |
virtual unsigned | GetNearestNodeIndex (const ChastePoint< SPACE_DIM > &rTestPoint) |
virtual void | Scale (const double xFactor=1.0, const double yFactor=1.0, const double zFactor=1.0) |
virtual void | Translate (const c_vector< double, SPACE_DIM > &rDisplacement) |
void | Translate (const double xMovement=0.0, const double yMovement=0.0, const double zMovement=0.0) |
virtual void | Rotate (c_matrix< double, SPACE_DIM, SPACE_DIM > rotationMatrix) |
void | Rotate (c_vector< double, 3 > axis, double angle) |
void | RotateX (const double theta) |
void | RotateY (const double theta) |
void | RotateZ (const double theta) |
void | Rotate (double theta) |
bool | IsMeshChanging () const |
unsigned | CalculateMaximumContainingElementsPerProcess () const |
void | SetMeshHasChangedSinceLoading () |
Private Member Functions | |
template<class Archive > | |
void | serialize (Archive &archive, const unsigned int version) |
Friends | |
class | boost::serialization::access |
Additional Inherited Members | |
![]() | |
typedef std::vector< BoundaryElement< ELEMENT_DIM-1, SPACE_DIM > * >::const_iterator | BoundaryElementIterator |
![]() | |
typedef std::vector< Node< SPACE_DIM > * >::const_iterator | BoundaryNodeIterator |
![]() | |
unsigned | SolveNodeMapping (unsigned index) const |
unsigned | SolveElementMapping (unsigned index) const |
unsigned | SolveBoundaryElementMapping (unsigned index) const |
template<class MESHER_IO > | |
void | ExportToMesher (NodeMap &map, MESHER_IO &mesherInput, int *elementList=nullptr) |
template<class MESHER_IO > | |
void | ImportFromMesher (MESHER_IO &mesherOutput, unsigned numberOfElements, int *elementList, unsigned numberOfFaces, int *faceList, int *edgeMarkerList) |
void | InitialiseTriangulateIo (triangulateio &mesherIo) |
void | FreeTriangulateIo (triangulateio &mesherIo) |
![]() | |
void | SetElementOwnerships () |
![]() | |
ChasteCuboid< SPACE_DIM > | CalculateBoundingBox (const std::vector< Node< SPACE_DIM > * > &rNodes) const |
![]() | |
std::vector< c_vector< double, SPACE_DIM > > | mElementWeightedDirections |
std::vector< c_matrix< double, SPACE_DIM, ELEMENT_DIM > > | mElementJacobians |
std::vector< c_matrix< double, ELEMENT_DIM, SPACE_DIM > > | mElementInverseJacobians |
std::vector< double > | mElementJacobianDeterminants |
std::vector< c_vector< double, SPACE_DIM > > | mBoundaryElementWeightedDirections |
std::vector< double > | mBoundaryElementJacobianDeterminants |
![]() | |
bool | mMeshIsLinear |
std::vector< Element< ELEMENT_DIM, SPACE_DIM > * > | mElements |
std::vector< BoundaryElement< ELEMENT_DIM-1, SPACE_DIM > * > | mBoundaryElements |
![]() | |
std::vector< Node< SPACE_DIM > * > | mNodes |
std::vector< Node< SPACE_DIM > * > | mBoundaryNodes |
DistributedVectorFactory * | mpDistributedVectorFactory |
std::vector< unsigned > | mNodePermutation |
std::string | mMeshFileBaseName |
bool | mMeshChangesDuringSimulation |
A drop-in replacement for TetrahedralMesh that doesn't cache any jacobian-related data.
It thus provides essentially a serial version of the memory-efficient DistributedTetrahedralMesh, enabling the use of larger meshes on single-processor machines.
Definition at line 53 of file NonCachedTetrahedralMesh.hpp.
|
virtual |
Get the Jacobian matrix, its inverse and its determinant for a given element.
elementIndex | index of the element in the mesh |
rJacobian | the Jacobian matrix |
rJacobianDeterminant | the determinant of the Jacobian matrix |
rInverseJacobian | the inverse Jacobian matrix |
Reimplemented from TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >.
Definition at line 53 of file NonCachedTetrahedralMesh.cpp.
|
virtual |
Get the Jacobian matrix and its determinant for a given element.
elementIndex | index of the element in the mesh |
rJacobian | the Jacobian matrix |
rJacobianDeterminant | the determinant of the Jacobian matrix |
Reimplemented from TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >.
Definition at line 46 of file NonCachedTetrahedralMesh.cpp.
References EXCEPTION.
|
virtual |
Get the weighted direction and the determinant of the Jacobian for a given boundary element.
elementIndex | index of the element in the mesh |
rWeightedDirection | the weighted direction |
rJacobianDeterminant | the determinant of the Jacobian matrix |
Reimplemented from TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >.
Definition at line 70 of file NonCachedTetrahedralMesh.cpp.
|
virtual |
Get the weighted direction and the determinant of the Jacobian for a given element.
elementIndex | index of the element in the mesh |
rWeightedDirection | the weighted direction |
rJacobianDeterminant | the determinant of the Jacobian matrix |
Reimplemented from TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >.
Definition at line 63 of file NonCachedTetrahedralMesh.cpp.
References EXCEPTION.
|
virtual |
Reimplemented to do no caching
Reimplemented from TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >.
Definition at line 40 of file NonCachedTetrahedralMesh.cpp.
|
inlineprivate |
Serialize the mesh.
archive | the archive |
version | the current version of this class |
Definition at line 65 of file NonCachedTetrahedralMesh.hpp.
Needed for serialization.
Definition at line 57 of file NonCachedTetrahedralMesh.hpp.