ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM > Class Template Reference

#include <ImmersedBoundaryMeshReader.hpp>

Inheritance diagram for ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >:

Collaboration diagram for ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >:

Public Member Functions
	ImmersedBoundaryMeshReader (std::string pathBaseName)
	~ImmersedBoundaryMeshReader ()
unsigned	GetNumElements () const
unsigned	GetNumLaminas () const
unsigned	GetNumNodes () const
unsigned	GetNumGridPtsX () const
unsigned	GetNumGridPtsY () const
unsigned	GetNumElementAttributes () const
unsigned	GetNumLaminaAttributes () const
double	GetCharacteristicNodeSpacing ()
void	Reset ()
std::vector< double >	GetNextNode ()
std::vector< double >	GetNextGridRow ()
ImmersedBoundaryElementData	GetNextImmersedBoundaryElementData ()
ImmersedBoundaryElementData	GetNextImmersedBoundaryLaminaData ()
unsigned	GetNumFaces () const
ElementData	GetNextElementData ()
ElementData	GetNextFaceData ()
Public Member Functions inherited from AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
virtual unsigned	GetNumCableElements () const
virtual unsigned	GetNumFaceAttributes () const
virtual unsigned	GetNumCableElementAttributes () const
virtual std::vector< double >	GetNodeAttributes ()
unsigned	GetNumEdges () const
virtual ElementData	GetNextCableElementData ()
ElementData	GetNextEdgeData ()
virtual std::vector< double >	GetNode (unsigned index)
virtual ElementData	GetElementData (unsigned index)
virtual ElementData	GetFaceData (unsigned index)
ElementData	GetEdgeData (unsigned index)
virtual std::vector< unsigned >	GetContainingElementIndices (unsigned index)
virtual std::string	GetMeshFileBaseName ()
virtual unsigned	GetOrderOfElements ()
virtual unsigned	GetOrderOfBoundaryElements ()
virtual bool	GetReadContainingElementOfBoundaryElement ()
virtual bool	IsFileFormatBinary ()
virtual bool	HasNclFile ()
virtual bool	HasNodePermutation ()
virtual const std::vector< unsigned > &	rGetNodePermutation ()
ElementIterator	GetElementIteratorBegin ()
ElementIterator	GetElementIteratorBegin (const std::set< unsigned > &rIndices)
ElementIterator	GetElementIteratorEnd ()
NodeIterator	GetNodeIteratorBegin ()
NodeIterator	GetNodeIteratorBegin (const std::set< unsigned > &rIndices)
NodeIterator	GetNodeIteratorEnd ()

Private Member Functions
void	OpenFiles ()
void	OpenNodeFile ()
void	OpenElementsFile ()
void	OpenLaminasFile ()
void	OpenGridFile ()
void	ReadHeaders ()
void	CloseFiles ()
void	GetNextLineFromStream (std::ifstream &fileStream, std::string &rawLine)

Private Attributes
std::string	mFilesBaseName
std::ifstream	mNodesFile
std::ifstream	mElementsFile
std::ifstream	mLaminasFile
std::ifstream	mGridFile
bool	mIndexFromZero
unsigned	mNumNodes
unsigned	mNumElements
unsigned	mNumLaminas
unsigned	mNodesRead
unsigned	mElementsRead
unsigned	mLaminasRead
unsigned	mNumNodeAttributes
unsigned	mNumElementAttributes
unsigned	mNumLaminaAttributes
unsigned	mNumGridPtsX
unsigned	mNumGridPtsY
double	mCharacteristicNodeSpacing

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >

A mesh reader class for immersed boundary meshes.

Definition at line 79 of file ImmersedBoundaryMeshReader.hpp.

Constructor & Destructor Documentation

ImmersedBoundaryMeshReader()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::ImmersedBoundaryMeshReader

(

std::string

pathBaseName

)

Constructor.

Parameters

pathBaseName

the base name for results files

Definition at line 42 of file ImmersedBoundaryMeshReader.cpp.

References ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::OpenFiles(), and ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::ReadHeaders().

~ImmersedBoundaryMeshReader()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::~ImmersedBoundaryMeshReader ( )

inline

Destructor.

Definition at line 192 of file ImmersedBoundaryMeshReader.hpp.

Member Function Documentation

CloseFiles()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::CloseFiles ( )

private

Close node and element files.

Definition at line 401 of file ImmersedBoundaryMeshReader.cpp.

GetCharacteristicNodeSpacing()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

double ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::GetCharacteristicNodeSpacing

(

)

Returns

the characteristic node spacing in the mesh

Definition at line 100 of file ImmersedBoundaryMeshReader.cpp.

GetNextElementData()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

ElementData ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::GetNextElementData ( )

virtual

Returns

the nodes of each element (and any attribute information, if there is any) in turn.

Implements AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >.

Definition at line 438 of file ImmersedBoundaryMeshReader.cpp.

References ElementData::AttributeValue, and ElementData::NodeIndices.

GetNextFaceData()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

ElementData ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::GetNextFaceData ( )

virtual

Returns

a vector of the nodes of each face in turn.

Implements AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >.

Definition at line 447 of file ImmersedBoundaryMeshReader.cpp.

References ElementData::AttributeValue, and ElementData::NodeIndices.

GetNextGridRow()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

std::vector< double > ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::GetNextGridRow

(

)

Returns

the next row of the fluid velocity grids.

Definition at line 147 of file ImmersedBoundaryMeshReader.cpp.

GetNextImmersedBoundaryElementData()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

ImmersedBoundaryElementData ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::GetNextImmersedBoundaryElementData

(

)

Returns

the nodes of each element (and any attribute information, if there is any) in turn.

Definition at line 168 of file ImmersedBoundaryMeshReader.cpp.

References ImmersedBoundaryElementData::AttributeValue, ImmersedBoundaryElementData::averageNodeSpacing, ImmersedBoundaryElementData::cornerNodeIndices, EXCEPTION, ImmersedBoundaryElementData::fluidSourceIndex, ImmersedBoundaryElementData::hasFluidSource, ImmersedBoundaryElementData::isBoundaryElement, and ImmersedBoundaryElementData::NodeIndices.

GetNextImmersedBoundaryLaminaData()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

ImmersedBoundaryElementData ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::GetNextImmersedBoundaryLaminaData

(

)

Returns

the nodes of each lamina (and any attribute information, if there is any) in turn.

Definition at line 232 of file ImmersedBoundaryMeshReader.cpp.

References ImmersedBoundaryElementData::AttributeValue, ImmersedBoundaryElementData::averageNodeSpacing, ImmersedBoundaryElementData::cornerNodeIndices, EXCEPTION, ImmersedBoundaryElementData::fluidSourceIndex, ImmersedBoundaryElementData::hasFluidSource, ImmersedBoundaryElementData::isBoundaryElement, and ImmersedBoundaryElementData::NodeIndices.

GetNextLineFromStream()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::GetNextLineFromStream ( std::ifstream &  fileStream, std::string &  rawLine  )

private

Get the next line from a given file stream.

Parameters

fileStream	the file stream
rawLine	the raw line (may contain comments)

Definition at line 410 of file ImmersedBoundaryMeshReader.cpp.

References EXCEPTION.

GetNextNode()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

std::vector< double > ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::GetNextNode ( )

virtual

Returns

the coordinates of each node in turn.

Implements AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >.

Definition at line 117 of file ImmersedBoundaryMeshReader.cpp.

References EXCEPTION.

GetNumElementAttributes()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

unsigned ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::GetNumElementAttributes ( ) const

virtual

Returns

the number of attributes associated with elements in the mesh

Reimplemented from AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >.

Definition at line 88 of file ImmersedBoundaryMeshReader.cpp.

GetNumElements()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

unsigned ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::GetNumElements ( ) const

virtual

Returns

the number of elements in the mesh.

Implements AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >.

Definition at line 58 of file ImmersedBoundaryMeshReader.cpp.

GetNumFaces()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

unsigned ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::GetNumFaces ( ) const

virtual

Returns

the number of faces in the mesh (synonym of GetNumEdges()).

Implements AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >.

Definition at line 432 of file ImmersedBoundaryMeshReader.cpp.

GetNumGridPtsX()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

unsigned ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::GetNumGridPtsX

(

)

const

Returns

the number of grid points in the x direction

Definition at line 76 of file ImmersedBoundaryMeshReader.cpp.

GetNumGridPtsY()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

unsigned ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::GetNumGridPtsY

(

)

const

Returns

the number of grid points in the y direction

Definition at line 82 of file ImmersedBoundaryMeshReader.cpp.

GetNumLaminaAttributes()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

unsigned ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::GetNumLaminaAttributes

(

)

const

Returns

the number of attributes associated with laminas in the mesh

Definition at line 94 of file ImmersedBoundaryMeshReader.cpp.

GetNumLaminas()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

unsigned ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::GetNumLaminas

(

)

const

Returns

the number of laminas in the mesh.

Definition at line 64 of file ImmersedBoundaryMeshReader.cpp.

GetNumNodes()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

unsigned ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::GetNumNodes ( ) const

virtual

Returns

the number of nodes in the mesh.

Implements AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >.

Definition at line 70 of file ImmersedBoundaryMeshReader.cpp.

OpenElementsFile()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::OpenElementsFile ( )

private

Open element file.

Definition at line 318 of file ImmersedBoundaryMeshReader.cpp.

References EXCEPTION.

OpenFiles()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::OpenFiles ( )

private

Open node and element files.

Definition at line 297 of file ImmersedBoundaryMeshReader.cpp.

Referenced by ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::ImmersedBoundaryMeshReader().

OpenGridFile()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::OpenGridFile ( )

private

Open grids file.

Definition at line 346 of file ImmersedBoundaryMeshReader.cpp.

References EXCEPTION.

OpenLaminasFile()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::OpenLaminasFile ( )

private

Open laminas file.

Definition at line 332 of file ImmersedBoundaryMeshReader.cpp.

References EXCEPTION.

OpenNodeFile()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::OpenNodeFile ( )

private

Open node file.

Definition at line 306 of file ImmersedBoundaryMeshReader.cpp.

References EXCEPTION.

ReadHeaders()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::ReadHeaders ( )

private

Read the file headers to determine node and element numbers and attributes.

Definition at line 360 of file ImmersedBoundaryMeshReader.cpp.

Referenced by ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::ImmersedBoundaryMeshReader().

Reset()

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::Reset ( )

virtual

Reset pointers to beginning.

Implements AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >.

Definition at line 106 of file ImmersedBoundaryMeshReader.cpp.

Member Data Documentation

mCharacteristicNodeSpacing

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

double ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::mCharacteristicNodeSpacing

private

The characteristic node spacing.

Definition at line 135 of file ImmersedBoundaryMeshReader.hpp.

mElementsFile

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

std::ifstream ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::mElementsFile

private

The elements file for the mesh.

Definition at line 90 of file ImmersedBoundaryMeshReader.hpp.

mElementsRead

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

unsigned ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::mElementsRead

private

Number of elements read in by the reader.

Definition at line 114 of file ImmersedBoundaryMeshReader.hpp.

mFilesBaseName

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

std::string ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::mFilesBaseName

private

The base name for mesh files.

Definition at line 84 of file ImmersedBoundaryMeshReader.hpp.

mGridFile

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

std::ifstream ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::mGridFile

private

The grid file for the mesh.

Definition at line 96 of file ImmersedBoundaryMeshReader.hpp.

mIndexFromZero

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

bool ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::mIndexFromZero

private

True if input data are numbered from zero, false otherwise.

Definition at line 99 of file ImmersedBoundaryMeshReader.hpp.

mLaminasFile

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

std::ifstream ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::mLaminasFile

private

The laminas file for the mesh.

Definition at line 93 of file ImmersedBoundaryMeshReader.hpp.

mLaminasRead

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

unsigned ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::mLaminasRead

private

Number of laminas read in by the reader.

Definition at line 117 of file ImmersedBoundaryMeshReader.hpp.

mNodesFile

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

std::ifstream ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::mNodesFile

private

The nodes file for the mesh.

Definition at line 87 of file ImmersedBoundaryMeshReader.hpp.

mNodesRead

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

unsigned ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::mNodesRead

private

Number of nodes read in by the reader.

Definition at line 111 of file ImmersedBoundaryMeshReader.hpp.

mNumElementAttributes

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

unsigned ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::mNumElementAttributes

private

Number of attributes stored for each element.

Definition at line 123 of file ImmersedBoundaryMeshReader.hpp.

mNumElements

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

unsigned ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::mNumElements

private

Number of elements in the mesh.

Definition at line 105 of file ImmersedBoundaryMeshReader.hpp.

mNumGridPtsX

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

unsigned ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::mNumGridPtsX

private

Is the number of grid points in the x direction.

Definition at line 129 of file ImmersedBoundaryMeshReader.hpp.

mNumGridPtsY

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

unsigned ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::mNumGridPtsY

private

Is the number of grid points in the y direction.

Definition at line 132 of file ImmersedBoundaryMeshReader.hpp.

mNumLaminaAttributes

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

unsigned ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::mNumLaminaAttributes

private

Number of attributes stored for each lamina.

Definition at line 126 of file ImmersedBoundaryMeshReader.hpp.

mNumLaminas

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

unsigned ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::mNumLaminas

private

Number of laminas in the mesh.

Definition at line 108 of file ImmersedBoundaryMeshReader.hpp.

mNumNodeAttributes

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

unsigned ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::mNumNodeAttributes

private

Number of attributes stored at each node.

Definition at line 120 of file ImmersedBoundaryMeshReader.hpp.

mNumNodes

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

unsigned ImmersedBoundaryMeshReader< ELEMENT_DIM, SPACE_DIM >::mNumNodes

private

Number of nodes in the mesh.

Definition at line 102 of file ImmersedBoundaryMeshReader.hpp.

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The documentation for this class was generated from the following files:

• mesh/src/immersed_boundary/ImmersedBoundaryMeshReader.hpp
• mesh/src/immersed_boundary/ImmersedBoundaryMeshReader.cpp