Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
AbstractMeshReader.hpp
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35
36
37#ifndef _ABSTRACTMESHREADER_HPP_
38#define _ABSTRACTMESHREADER_HPP_
39
40#include <string>
41#include <vector>
42#include <set>
43#include <cassert>
44#include <boost/iterator/iterator_facade.hpp>
45#include "Exception.hpp"
46
52{
53 // Constructor to initialise default values, to prevent -Werror=maybe-uninitialized on some compilers
55 : NodeIndices(std::vector<unsigned>()),
58 std::vector<unsigned> NodeIndices;
61};
62
75template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
77{
78
79public:
80
81 virtual ~AbstractMeshReader()
82 {}
83
85 virtual unsigned GetNumElements() const =0;
86
88 virtual unsigned GetNumNodes() const =0;
89
91 virtual unsigned GetNumFaces() const =0;
92
94 virtual unsigned GetNumCableElements() const;
95
97 virtual unsigned GetNumElementAttributes() const;
98
100 virtual unsigned GetNumFaceAttributes() const;
101
103 virtual unsigned GetNumCableElementAttributes() const;
104
112 virtual std::vector<double> GetNodeAttributes();
113
115 unsigned GetNumEdges() const;
116
118 virtual std::vector<double> GetNextNode()=0;
119
121 virtual void Reset()=0;
122
125
128
131
134
135
142 virtual std::vector<double> GetNode(unsigned index);
143
150 virtual ElementData GetElementData(unsigned index);
151
158 virtual ElementData GetFaceData(unsigned index);
159
166 ElementData GetEdgeData(unsigned index);
167
175 virtual std::vector<unsigned> GetContainingElementIndices(unsigned index);
176
180 virtual std::string GetMeshFileBaseName();
181
185 virtual unsigned GetOrderOfElements();
186
190 virtual unsigned GetOrderOfBoundaryElements();
191
196
197
204 virtual bool IsFileFormatBinary();
205
212 virtual bool HasNclFile();
213
220 virtual bool HasNodePermutation();
221
228 virtual const std::vector<unsigned>& rGetNodePermutation();
229
230
231 // Iterator classes
232
236 class ElementIterator : public boost::iterator_facade<ElementIterator, const ElementData,
237 boost::single_pass_traversal_tag>
238 {
239 public:
251 : mIndex(index),
252 mpIndices(nullptr),
253 mpReader(pReader)
254 {
255 CacheData(mIndex, true);
256 }
257
265 ElementIterator(const std::set<unsigned>& rIndices,
267
271 unsigned GetIndex() const
272 {
273 return mIndex;
274 }
275
276 private:
277 friend class boost::iterator_core_access;
278
286 void CacheData(unsigned index, bool firstRead = false);
287
291 void increment();
292
297 bool equal(const ElementIterator& rOther) const
298 {
299 return mIndex == rOther.mIndex;
300 }
301
310 {
311 assert(mpReader);
312 assert(mIndex < mpReader->GetNumElements());
313 // This was cached in increment()
314 return mLastDataRead;
315 }
316
318 unsigned mIndex;
319
321 const std::set<unsigned>* mpIndices;
322
324 std::set<unsigned>::const_iterator mIndicesIterator;
325
328
331 };
332
341
351 ElementIterator GetElementIteratorBegin(const std::set<unsigned>& rIndices);
352
357
358
363 class NodeIterator : public boost::iterator_facade<NodeIterator, const std::vector<double>,
364 boost::single_pass_traversal_tag>
365 {
366 public:
378 : mIndex(index),
379 mpIndices(nullptr),
380 mpReader(pReader)
381 {
382 CacheData(mIndex, true);
383 }
384
392 NodeIterator(const std::set<unsigned>& rIndices,
394
398 unsigned GetIndex() const
399 {
400 return mIndex;
401 }
402
403 private:
404 friend class boost::iterator_core_access;
405
413 void CacheData(unsigned index, bool firstRead = false);
414
418 void increment();
419
424 bool equal(const NodeIterator& rOther) const
425 {
426 return mIndex == rOther.mIndex;
427 }
428
435 const std::vector<double>& dereference() const
436 {
437 assert(mpReader);
438 assert(mIndex < mpReader->GetNumNodes());
439 // This was cached in increment()
440 return mLastDataRead;
441 }
442
444 unsigned mIndex;
445
447 const std::set<unsigned>* mpIndices;
448
450 std::set<unsigned>::const_iterator mIndicesIterator;
451
454
456 std::vector<double> mLastDataRead;
457 };
458
467
477 NodeIterator GetNodeIteratorBegin(const std::set<unsigned>& rIndices);
478
483};
484
485#endif //_ABSTRACTMESHREADER_HPP_
const double DOUBLE_UNSET
Definition Exception.hpp:57
const unsigned UNSIGNED_UNSET
Definition Exception.hpp:53
AbstractMeshReader< ELEMENT_DIM, SPACE_DIM > * mpReader
ElementIterator(unsigned index, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM > *pReader)
bool equal(const ElementIterator &rOther) const
void CacheData(unsigned index, bool firstRead=false)
std::set< unsigned >::const_iterator mIndicesIterator
const std::set< unsigned > * mpIndices
const ElementData & dereference() const
const std::set< unsigned > * mpIndices
AbstractMeshReader< ELEMENT_DIM, SPACE_DIM > * mpReader
std::set< unsigned >::const_iterator mIndicesIterator
NodeIterator(unsigned index, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM > *pReader)
const std::vector< double > & dereference() const
void CacheData(unsigned index, bool firstRead=false)
bool equal(const NodeIterator &rOther) const
ElementIterator GetElementIteratorBegin()
virtual unsigned GetNumCableElementAttributes() const
ElementData GetEdgeData(unsigned index)
ElementData GetNextEdgeData()
virtual void Reset()=0
virtual unsigned GetNumElements() const =0
virtual std::vector< unsigned > GetContainingElementIndices(unsigned index)
virtual ElementData GetNextElementData()=0
virtual bool GetReadContainingElementOfBoundaryElement()
virtual unsigned GetOrderOfBoundaryElements()
virtual std::string GetMeshFileBaseName()
virtual unsigned GetNumFaces() const =0
NodeIterator GetNodeIteratorEnd()
virtual unsigned GetNumElementAttributes() const
virtual std::vector< double > GetNode(unsigned index)
virtual std::vector< double > GetNextNode()=0
virtual const std::vector< unsigned > & rGetNodePermutation()
virtual ElementData GetNextCableElementData()
unsigned GetNumEdges() const
virtual unsigned GetNumCableElements() const
virtual std::vector< double > GetNodeAttributes()
virtual ElementData GetFaceData(unsigned index)
virtual unsigned GetNumFaceAttributes() const
virtual bool HasNodePermutation()
virtual bool IsFileFormatBinary()
virtual unsigned GetNumNodes() const =0
virtual ElementData GetNextFaceData()=0
NodeIterator GetNodeIteratorBegin()
virtual ElementData GetElementData(unsigned index)
ElementIterator GetElementIteratorEnd()
virtual unsigned GetOrderOfElements()
unsigned ContainingElement
std::vector< unsigned > NodeIndices