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Chaste Commit::333233612e3dcc941d260418acd7b5ccdc30390e
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#include <CellAncestorWriter.hpp>
Public Member Functions | |
CellAncestorWriter () | |
double | GetCellDataForVtkOutput (CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
virtual void | VisitCell (CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
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AbstractCellWriter (const std::string &rFileName) | |
virtual c_vector< double, SPACE_DIM > | GetVectorCellDataForVtkOutput (CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
bool | GetOutputScalarData () |
bool | GetOutputVectorData () |
void | SetVtkCellDataName (std::string vtkCellDataName) |
void | SetVtkVectorCellDataName (std::string vtkCellDataName) |
std::string | GetVtkCellDataName () |
std::string | GetVtkVectorCellDataName () |
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AbstractCellBasedWriter (const std::string &rFileName) | |
virtual | ~AbstractCellBasedWriter () |
void | CloseFile () |
virtual void | OpenOutputFile (OutputFileHandler &rOutputFileHandler) |
void | OpenOutputFileForAppend (OutputFileHandler &rOutputFileHandler) |
virtual void | WriteTimeStamp () |
virtual void | WriteNewline () |
void | SetFileName (std::string fileName) |
std::string | GetFileName () |
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virtual | ~Identifiable () |
std::string | GetIdentifier () const |
Private Member Functions | |
template<class Archive > | |
void | serialize (Archive &archive, const unsigned int version) |
Friends | |
class | boost::serialization::access |
Additional Inherited Members | |
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bool | mOutputScalarData |
bool | mOutputVectorData |
std::string | mVtkCellDataName |
std::string | mVtkVectorCellDataName |
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std::string | mFileName |
out_stream | mpOutStream |
A class written using the visitor pattern for writing cell ancestors to file.
The output file is called results.vizancestors by default. If VTK is switched on, then the writer also specifies the VTK output for each cell, which is stored in the VTK cell data "Ancestors" by default.
Definition at line 51 of file CellAncestorWriter.hpp.
CellAncestorWriter< ELEMENT_DIM, SPACE_DIM >::CellAncestorWriter | ( | ) |
Default constructor.
Definition at line 40 of file CellAncestorWriter.cpp.
References AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >::mVtkCellDataName.
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virtual |
Overridden GetCellDataForVtkOutput() method.
Get a double associated with a cell. This method reduces duplication of code between the methods VisitCell() and AddVtkData().
pCell | a cell |
pCellPopulation | a pointer to the cell population owning the cell |
Reimplemented from AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 47 of file CellAncestorWriter.cpp.
References UNSIGNED_UNSET.
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inlineprivate |
Serialize the object and its member variables.
archive | the archive |
version | the current version of this class |
Definition at line 63 of file CellAncestorWriter.hpp.
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virtual |
Overridden VisitCell() method.
Visit a cell and write its ancestor data.
Outputs a line of space-separated values of the form: [cell 0 ancestor] [cell 1 ancestor] [cell 2 ancestor]... where -1 is used to denote a cell whose ancestor is not set.
This is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
pCell | a cell |
pCellPopulation | a pointer to the cell population owning the cell |
Implements AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 54 of file CellAncestorWriter.cpp.
References UNSIGNED_UNSET.
Needed for serialization.
Definition at line 55 of file CellAncestorWriter.hpp.