Chaste Commit::ca8ccdedf819b6e02855bc0e8e6f50bdecbc5208
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#include <CryptCellsGenerator.hpp>
Public Member Functions | |
void | Generate (std::vector< CellPtr > &rCells, AbstractMesh< 2, 2 > *pMesh, const std::vector< unsigned > locationIndices, bool randomBirthTimes, double y0=0.3, double y1=2.0, double y2=3.0, double y3=4.0, bool initialiseCells=false) |
Public Member Functions inherited from CellsGenerator< CELL_CYCLE_MODEL, 2 > | |
void | GenerateBasic (std::vector< CellPtr > &rCells, unsigned numCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >(), boost::shared_ptr< AbstractCellProperty > pCellProliferativeType=boost::shared_ptr< AbstractCellProperty >()) |
void | GenerateBasicRandom (std::vector< CellPtr > &rCells, unsigned numCells, boost::shared_ptr< AbstractCellProperty > pCellProliferativeType=boost::shared_ptr< AbstractCellProperty >()) |
void | GenerateGivenLocationIndices (std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices, boost::shared_ptr< AbstractCellProperty > pCellProliferativeType=boost::shared_ptr< AbstractCellProperty >()) |
A subclass of CellsGenerator that generates cells for crypt simulations.
It is templated over types of cell-cycle model.
Definition at line 83 of file CryptCellsGenerator.hpp.
void CryptCellsGenerator< CELL_CYCLE_MODEL >::Generate | ( | std::vector< CellPtr > & | rCells, |
AbstractMesh< 2, 2 > * | pMesh, | ||
const std::vector< unsigned > | locationIndices, | ||
bool | randomBirthTimes, | ||
double | y0 = 0.3 , |
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double | y1 = 2.0 , |
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double | y2 = 3.0 , |
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double | y3 = 4.0 , |
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bool | initialiseCells = false |
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) |
Generates cells of a specified cell cycle type under the correct crypt conditions and gives random ages if required, or gives them an age of 0.0 - creates least work for solver startup.
rCells | An empty cells vector for this function to fill up |
pMesh | The crypt mesh (can be cylindrical) |
locationIndices | the node indices corresponding to real cells |
randomBirthTimes | Whether to assign the cells random birth times (this can be expensive computationally with ODE models) |
y0 | below this line cells are generation 0 (defaults to 0.3) |
y1 | below this line cells are generation 1 (defaults to 2.0) |
y2 | below this line cells are generation 2 (defaults to 3.0) |
y3 | below this line cells are generation 3 (defaults to 4.0) |
initialiseCells | whether to initialise the cell-cycle models as each cell is created |
Definition at line 116 of file CryptCellsGenerator.hpp.
References AbstractMesh< ELEMENT_DIM, SPACE_DIM >::GetNode(), AbstractMesh< ELEMENT_DIM, SPACE_DIM >::GetNumNodes(), CellPropertyRegistry::Instance(), RandomNumberGenerator::Instance(), and RandomNumberGenerator::ranf().