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Chaste Commit::333233612e3dcc941d260418acd7b5ccdc30390e
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#include <AbstractCorrectionTermAssembler.hpp>
Protected Member Functions | |
void | ResetInterpolatedQuantities (void) |
void | IncrementInterpolatedQuantities (double phiI, const Node< SPACE_DIM > *pNode) |
bool | ElementAssemblyCriterion (Element< ELEM_DIM, SPACE_DIM > &rElement) |
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void | ComputeTransformedBasisFunctionDerivatives (const ChastePoint< ELEMENT_DIM > &rPoint, const c_matrix< double, ELEMENT_DIM, SPACE_DIM > &rInverseJacobian, c_matrix< double, SPACE_DIM, ELEMENT_DIM+1 > &rReturnValue) |
void | DoAssemble () |
virtual c_matrix< double, PROBLEM_DIM *(ELEMENT_DIM+1), PROBLEM_DIM *(ELEMENT_DIM+1)> | ComputeMatrixTerm (c_vector< double, ELEMENT_DIM+1 > &rPhi, c_matrix< double, SPACE_DIM, ELEMENT_DIM+1 > &rGradPhi, ChastePoint< SPACE_DIM > &rX, c_vector< double, PROBLEM_DIM > &rU, c_matrix< double, PROBLEM_DIM, SPACE_DIM > &rGradU, Element< ELEMENT_DIM, SPACE_DIM > *pElement) |
virtual c_vector< double, PROBLEM_DIM *(ELEMENT_DIM+1)> | ComputeVectorTerm (c_vector< double, ELEMENT_DIM+1 > &rPhi, c_matrix< double, SPACE_DIM, ELEMENT_DIM+1 > &rGradPhi, ChastePoint< SPACE_DIM > &rX, c_vector< double, PROBLEM_DIM > &rU, c_matrix< double, PROBLEM_DIM, SPACE_DIM > &rGradU, Element< ELEMENT_DIM, SPACE_DIM > *pElement) |
virtual void | AssembleOnElement (Element< ELEMENT_DIM, SPACE_DIM > &rElement, c_matrix< double, PROBLEM_DIM *(ELEMENT_DIM+1), PROBLEM_DIM *(ELEMENT_DIM+1) > &rAElem, c_vector< double, PROBLEM_DIM *(ELEMENT_DIM+1)> &rBElem) |
virtual bool | ElementAssemblyCriterion (Element< ELEMENT_DIM, SPACE_DIM > &rElement) |
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virtual double | GetCurrentSolutionOrGuessValue (unsigned nodeIndex, unsigned indexOfUnknown) |
virtual void | IncrementInterpolatedGradientQuantities (const c_matrix< double, SPACE_DIM, ELEMENT_DIM+1 > &rGradPhi, unsigned phiIndex, const Node< SPACE_DIM > *pNode) |
Additional Inherited Members | |
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typedef LinearBasisFunction< ELEMENT_DIM > | BasisFunction |
A parent class for MonodomainCorrectionTermAssembler and BidomainCorrectionTermAssembler, used for state variable interpolation (SVI).
Definition at line 49 of file AbstractCorrectionTermAssembler.hpp.
AbstractCorrectionTermAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::AbstractCorrectionTermAssembler | ( | AbstractTetrahedralMesh< ELEM_DIM, SPACE_DIM > * | pMesh, |
AbstractCardiacTissue< ELEM_DIM, SPACE_DIM > * | pTissue | ||
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Constructor.
pMesh | pointer to the mesh |
pTissue | pointer to the cardiac tissue |
Definition at line 40 of file AbstractCorrectionTermAssembler.cpp.
References AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::GetElementIteratorBegin(), AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::GetElementIteratorEnd(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetIndex(), AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::GetNumElements(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetOwnership(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetUnsignedAttribute(), HeartRegionCode::IsRegionBath(), and AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::mElementsCanDoSvi.
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rElement | the element to test |
Definition at line 109 of file AbstractCorrectionTermAssembler.cpp.
References AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetIndex(), and AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNodeGlobalIndex().
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protectedvirtual |
Interpolates state variables and ionic current.
phiI | |
pNode |
Reimplemented from AbstractFeAssemblerCommon< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >.
Definition at line 94 of file AbstractCorrectionTermAssembler.cpp.
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Resets interpolated state variables and ionic current.
Reimplemented from AbstractFeAssemblerCommon< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >.
Definition at line 83 of file AbstractCorrectionTermAssembler.cpp.
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Vector of bools, one bool per element, representing whether each element can do SVI. If the element has different cell models at each node, or has been designated a bath element, then it cannot do SVI.
Definition at line 70 of file AbstractCorrectionTermAssembler.hpp.
Referenced by AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >::AbstractCorrectionTermAssembler(), and AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, 2 >::ResetInterpolatedQuantities().
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Ionic current to be interpolated from cache
Definition at line 54 of file AbstractCorrectionTermAssembler.hpp.
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State variables interpolated onto quadrature point
Definition at line 57 of file AbstractCorrectionTermAssembler.hpp.