Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
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#include <LinearSpringWithVariableSpringConstantsForce.hpp>
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template<class Archive > | |
void | serialize (Archive &archive, const unsigned int version) |
Friends | |
class | TestLinearSpringWithVariableSpringConstantsForce |
class | boost::serialization::access |
A subclass of GeneralisedLinearSpringForce with variable spring constants.
Definition at line 48 of file LinearSpringWithVariableSpringConstantsForce.hpp.
LinearSpringWithVariableSpringConstantsForce< DIM >::LinearSpringWithVariableSpringConstantsForce | ( | ) |
Constructor.
Definition at line 45 of file LinearSpringWithVariableSpringConstantsForce.cpp.
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Destructor.
Definition at line 60 of file LinearSpringWithVariableSpringConstantsForce.cpp.
void LinearSpringWithVariableSpringConstantsForce< DIM >::AddForceContribution | ( | AbstractCellPopulation< DIM > & | rCellPopulation | ) |
Overridden AddForceContribution method.
rCellPopulation | reference to the cell population |
Definition at line 223 of file LinearSpringWithVariableSpringConstantsForce.cpp.
References EXCEPTION, MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::SpringsBegin(), and MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::SpringsEnd().
double LinearSpringWithVariableSpringConstantsForce< DIM >::GetApoptoticSpringCompressionStiffness | ( | ) |
Definition at line 275 of file LinearSpringWithVariableSpringConstantsForce.cpp.
double LinearSpringWithVariableSpringConstantsForce< DIM >::GetApoptoticSpringTensionStiffness | ( | ) |
Definition at line 262 of file LinearSpringWithVariableSpringConstantsForce.cpp.
double LinearSpringWithVariableSpringConstantsForce< DIM >::GetBetaCatSpringScaler | ( | ) |
Definition at line 249 of file LinearSpringWithVariableSpringConstantsForce.cpp.
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Overridden OutputForceParameters() method.
rParamsFile | the file stream to which the parameters are output |
Reimplemented from GeneralisedLinearSpringForce< DIM >.
Definition at line 288 of file LinearSpringWithVariableSpringConstantsForce.cpp.
References GeneralisedLinearSpringForce< ELEMENT_DIM, SPACE_DIM >::OutputForceParameters().
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Archive the object and its member variables.
archive | the archive |
version | the current version of this class |
Definition at line 63 of file LinearSpringWithVariableSpringConstantsForce.hpp.
References LinearSpringWithVariableSpringConstantsForce< DIM >::mApoptoticSpringCompressionStiffness, LinearSpringWithVariableSpringConstantsForce< DIM >::mApoptoticSpringTensionStiffness, LinearSpringWithVariableSpringConstantsForce< DIM >::mBetaCatSpringScaler, LinearSpringWithVariableSpringConstantsForce< DIM >::mMutantMutantMultiplier, LinearSpringWithVariableSpringConstantsForce< DIM >::mNormalMutantMultiplier, LinearSpringWithVariableSpringConstantsForce< DIM >::mUseApoptoticSprings, LinearSpringWithVariableSpringConstantsForce< DIM >::mUseBCatSprings, LinearSpringWithVariableSpringConstantsForce< DIM >::mUseEdgeBasedSpringConstant, and LinearSpringWithVariableSpringConstantsForce< DIM >::mUseMutantSprings.
void LinearSpringWithVariableSpringConstantsForce< DIM >::SetApoptoticSpringCompressionStiffness | ( | double | apoptoticSpringCompressionStiffness | ) |
Set mApoptoticSpringCompressionStiffness.
apoptoticSpringCompressionStiffness | the new value of mApoptoticSpringCompressionStiffness |
Definition at line 281 of file LinearSpringWithVariableSpringConstantsForce.cpp.
void LinearSpringWithVariableSpringConstantsForce< DIM >::SetApoptoticSprings | ( | bool | useApoptoticSprings | ) |
Set spring stiffness to be dependent on whether cells are apoptotic
useApoptoticSprings | whether to have apoptosis-dependent spring stiffness |
Definition at line 86 of file LinearSpringWithVariableSpringConstantsForce.cpp.
void LinearSpringWithVariableSpringConstantsForce< DIM >::SetApoptoticSpringTensionStiffness | ( | double | apoptoticSpringTensionStiffness | ) |
Set mApoptoticSpringTensionStiffness.
apoptoticSpringTensionStiffness | the new value of mApoptoticSpringTensionStiffness |
Definition at line 268 of file LinearSpringWithVariableSpringConstantsForce.cpp.
void LinearSpringWithVariableSpringConstantsForce< DIM >::SetBetaCateninSprings | ( | bool | useBCatSprings | ) |
Use the amount of beta-catenin on an edge to find spring constant.
useBCatSprings | whether to use beta-catenin-dependent spring stiffness |
Definition at line 80 of file LinearSpringWithVariableSpringConstantsForce.cpp.
void LinearSpringWithVariableSpringConstantsForce< DIM >::SetBetaCatSpringScaler | ( | double | betaCatSpringScaler | ) |
Set mBetaCatSpringScaler.
betaCatSpringScaler | the new value of mBetaCatSpringScaler |
Definition at line 255 of file LinearSpringWithVariableSpringConstantsForce.cpp.
void LinearSpringWithVariableSpringConstantsForce< DIM >::SetEdgeBasedSpringConstant | ( | bool | useEdgeBasedSpringConstant | ) |
Set whether to use an edge-based spring constant.
useEdgeBasedSpringConstant | whether to use an edge-based spring constant |
Definition at line 65 of file LinearSpringWithVariableSpringConstantsForce.cpp.
void LinearSpringWithVariableSpringConstantsForce< DIM >::SetMutantSprings | ( | bool | useMutantSprings, |
double | mutantMutantMultiplier = 2 , |
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double | normalMutantMultiplier = 1.5 |
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) |
Use different spring strengths depending on two cells: Normal-normal, Normal-mutant, mutant-mutant
useMutantSprings | whether to use mutant springs |
mutantMutantMultiplier | the multiplier for springs connecting two mutant cells |
normalMutantMultiplier | the multiplier for springs connecting a mutant cell with a normal cell |
Definition at line 72 of file LinearSpringWithVariableSpringConstantsForce.cpp.
double LinearSpringWithVariableSpringConstantsForce< DIM >::VariableSpringConstantMultiplicationFactor | ( | unsigned | nodeAGlobalIndex, |
unsigned | nodeBGlobalIndex, | ||
AbstractCellPopulation< DIM > & | rCellPopulation, | ||
bool | isCloserThanRestLength | ||
) |
Return a multiplication factor for the spring constant, which may depend on whether the given pair of neighbouring cells are e.g. undergoing apoptosis, have mutations, or experience variable levels of beta catenin.
nodeAGlobalIndex | index of one neighbouring node |
nodeBGlobalIndex | index of the other neighbouring node |
rCellPopulation | the cell population |
isCloserThanRestLength | whether the neighbouring nodes lie closer than the rest length of their connecting spring |
Definition at line 92 of file LinearSpringWithVariableSpringConstantsForce.cpp.
References AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetCellUsingLocationIndex(), AbstractVanLeeuwen2009WntSwatCellCycleModel::GetMembraneBoundBetaCateninLevel(), MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetSurfaceAreaOfVoronoiElement(), MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetVoronoiEdgeLength(), AbstractCellProperty::IsType(), and GeneralisedLinearSpringForce< ELEMENT_DIM, SPACE_DIM >::VariableSpringConstantMultiplicationFactor().
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Needed for serialization.
Definition at line 55 of file LinearSpringWithVariableSpringConstantsForce.hpp.
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Definition at line 50 of file LinearSpringWithVariableSpringConstantsForce.hpp.
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Non-dimensionalized 'stiffness' of a apoptotic cell under compression.
Definition at line 104 of file LinearSpringWithVariableSpringConstantsForce.hpp.
Referenced by LinearSpringWithVariableSpringConstantsForce< DIM >::serialize().
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Non-dimensionalized 'stiffness' of a apoptotic cell under tension.
Definition at line 101 of file LinearSpringWithVariableSpringConstantsForce.hpp.
Referenced by LinearSpringWithVariableSpringConstantsForce< DIM >::serialize().
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Scaling factor for beta catenin to spring strength.
Definition at line 98 of file LinearSpringWithVariableSpringConstantsForce.hpp.
Referenced by LinearSpringWithVariableSpringConstantsForce< DIM >::serialize().
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Multiplier for spring stiffness if mutant.
Definition at line 86 of file LinearSpringWithVariableSpringConstantsForce.hpp.
Referenced by LinearSpringWithVariableSpringConstantsForce< DIM >::serialize().
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Multiplier for spring stiffness if mutant.
Definition at line 89 of file LinearSpringWithVariableSpringConstantsForce.hpp.
Referenced by LinearSpringWithVariableSpringConstantsForce< DIM >::serialize().
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Use springs which are dependent on whether cells are apoptotic.
Definition at line 95 of file LinearSpringWithVariableSpringConstantsForce.hpp.
Referenced by LinearSpringWithVariableSpringConstantsForce< DIM >::serialize().
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Use springs which are dependent on beta-catenin levels.
Definition at line 92 of file LinearSpringWithVariableSpringConstantsForce.hpp.
Referenced by LinearSpringWithVariableSpringConstantsForce< DIM >::serialize().
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Whether to use spring constant proportional to cell-cell contact length/area (defaults to false).
Definition at line 80 of file LinearSpringWithVariableSpringConstantsForce.hpp.
Referenced by LinearSpringWithVariableSpringConstantsForce< DIM >::serialize().
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Whether to use different stiffnesses depending on whether either cell is a mutant.
Definition at line 83 of file LinearSpringWithVariableSpringConstantsForce.hpp.
Referenced by LinearSpringWithVariableSpringConstantsForce< DIM >::serialize().