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Chaste Commit::333233612e3dcc941d260418acd7b5ccdc30390e
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#include <VertexMeshOperationRecorder.hpp>
Public Member Functions | |
VertexMeshOperationRecorder () | |
~VertexMeshOperationRecorder () | |
void | SetEdgeHelper (EdgeHelper< SPACE_DIM > *pEdgeHelper) |
void | RecordT1Swap (T1SwapInfo< SPACE_DIM > &rSwapInfo) |
std::vector< T1SwapInfo< SPACE_DIM > > | GetT1SwapsInfo () const |
void | ClearT1SwapsInfo () |
void | RecordT2Swap (T2SwapInfo< SPACE_DIM > &rSwapInfo) |
std::vector< T2SwapInfo< SPACE_DIM > > | GetT2SwapsInfo () const |
void | ClearT2SwapsInfo () |
void | RecordT3Swap (T3SwapInfo< SPACE_DIM > &rSwapInfo) |
std::vector< T3SwapInfo< SPACE_DIM > > | GetT3SwapsInfo () const |
void | ClearT3SwapsInfo () |
void | RecordCellDivisionInfo (CellDivisionInfo< SPACE_DIM > &rDivisionInfo) |
std::vector< CellDivisionInfo< SPACE_DIM > > | GetCellDivisionInfo () const |
void | ClearCellDivisionInfo () |
const std::vector< EdgeOperation > & | GetEdgeOperations () |
void | ClearEdgeOperations () |
void | RecordNodeMergeOperation (const std::vector< unsigned > oldIds, VertexElement< ELEMENT_DIM, SPACE_DIM > *pElement, const std::pair< unsigned, unsigned > mergedNodesPair, const bool elementIndexIsRemapped=false) |
void | RecordEdgeSplitOperation (VertexElement< ELEMENT_DIM, SPACE_DIM > *pElement, const unsigned edgeIndex, const double insertedNodeRelPosition, const bool elementIndexIsRemapped=false) |
void | RecordCellDivideOperation (const std::vector< unsigned > &rOldIds, VertexElement< ELEMENT_DIM, SPACE_DIM > *pElement1, VertexElement< ELEMENT_DIM, SPACE_DIM > *pElement2) |
void | RecordNewEdgeOperation (VertexElement< ELEMENT_DIM, SPACE_DIM > *pElement, const unsigned edgeIndex) |
void | RecordEdgeMergeOperation (VertexElement< ELEMENT_DIM, SPACE_DIM > *pElement, const unsigned nodeIndex) |
Private Member Functions | |
template<class Archive > | |
void | serialize (Archive &archive, const unsigned int version) |
Private Attributes | |
std::vector< T1SwapInfo< SPACE_DIM > > | mT1Swaps |
std::vector< T2SwapInfo< SPACE_DIM > > | mT2Swaps |
std::vector< T3SwapInfo< SPACE_DIM > > | mT3Swaps |
std::vector< CellDivisionInfo< SPACE_DIM > > | mCellDivisions |
std::vector< EdgeOperation > | mEdgeOperations |
EdgeHelper< SPACE_DIM > * | mpEdgeHelper |
Friends | |
class | boost::serialization::access |
This class records operations performed on the mesh. In particular, this class records operations on edges and nodes during e.g. T1 transition or cell division.
The sequence of operations as well as their nature are needed for remapping of old (prior to an operation) edge based quantities into new state. For example, when an edge is split into two or, shrinks, the edge quantities may change according to the kind of operation.
Definition at line 64 of file VertexMeshOperationRecorder.hpp.
VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >::VertexMeshOperationRecorder | ( | ) |
Constructor.
Definition at line 41 of file VertexMeshOperationRecorder.cpp.
VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >::~VertexMeshOperationRecorder | ( | ) |
Destructor.
Definition at line 47 of file VertexMeshOperationRecorder.cpp.
void VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >::ClearCellDivisionInfo | ( | ) |
Clear information about T3 swaps.
Definition at line 124 of file VertexMeshOperationRecorder.cpp.
void VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >::ClearEdgeOperations | ( | ) |
Clear edge operations.
Definition at line 136 of file VertexMeshOperationRecorder.cpp.
void VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >::ClearT1SwapsInfo | ( | ) |
Clear information about T1 swaps
Definition at line 70 of file VertexMeshOperationRecorder.cpp.
void VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >::ClearT2SwapsInfo | ( | ) |
Clear information about T1 swaps
Definition at line 88 of file VertexMeshOperationRecorder.cpp.
void VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >::ClearT3SwapsInfo | ( | ) |
Clear information about T3 swaps
Definition at line 106 of file VertexMeshOperationRecorder.cpp.
std::vector< CellDivisionInfo< SPACE_DIM > > VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >::GetCellDivisionInfo | ( | ) | const |
Definition at line 118 of file VertexMeshOperationRecorder.cpp.
const std::vector< EdgeOperation > & VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >::GetEdgeOperations | ( | ) |
Definition at line 130 of file VertexMeshOperationRecorder.cpp.
std::vector< T1SwapInfo< SPACE_DIM > > VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >::GetT1SwapsInfo | ( | ) | const |
Definition at line 64 of file VertexMeshOperationRecorder.cpp.
std::vector< T2SwapInfo< SPACE_DIM > > VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >::GetT2SwapsInfo | ( | ) | const |
Definition at line 82 of file VertexMeshOperationRecorder.cpp.
std::vector< T3SwapInfo< SPACE_DIM > > VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >::GetT3SwapsInfo | ( | ) | const |
Definition at line 100 of file VertexMeshOperationRecorder.cpp.
void VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >::RecordCellDivideOperation | ( | const std::vector< unsigned > & | rOldIds, |
VertexElement< ELEMENT_DIM, SPACE_DIM > * | pElement1, | ||
VertexElement< ELEMENT_DIM, SPACE_DIM > * | pElement2 | ||
) |
Record cell divisions for VertexBasedPopulationSrn class to remap SRNs.
rOldIds | Global Edge IDs of parent cell prior cell division |
pElement1 | Daughter element |
pElement2 | Daughter element |
Definition at line 291 of file VertexMeshOperationRecorder.cpp.
References MutableElement< ELEMENT_DIM, SPACE_DIM >::GetEdge(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetIndex(), MutableElement< ELEMENT_DIM, SPACE_DIM >::GetLocalEdgeIndex(), MutableElement< ELEMENT_DIM, SPACE_DIM >::GetNumEdges(), and EdgeRemapInfo::SetSplitProportions().
void VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >::RecordCellDivisionInfo | ( | CellDivisionInfo< SPACE_DIM > & | rDivisionInfo | ) |
Record cell division event.
rDivisionInfo | information about a cell division event. |
Definition at line 112 of file VertexMeshOperationRecorder.cpp.
void VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >::RecordEdgeMergeOperation | ( | VertexElement< ELEMENT_DIM, SPACE_DIM > * | pElement, |
const unsigned | nodeIndex | ||
) |
Record merging of adjacent edges due to deletion of the shared node nodeIndex in element pElement
pElement | Pointer to element associated with edge merge |
nodeIndex | Global index of node |
Definition at line 450 of file VertexMeshOperationRecorder.cpp.
References AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetIndex(), and MutableElement< ELEMENT_DIM, SPACE_DIM >::GetNumEdges().
void VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >::RecordEdgeSplitOperation | ( | VertexElement< ELEMENT_DIM, SPACE_DIM > * | pElement, |
const unsigned | edgeIndex, | ||
const double | insertedNodeRelPosition, | ||
const bool | elementIndexIsRemapped = false |
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) |
Record edge split operation in element pElement.
pElement | Pointer to element associated with edge split |
edgeIndex | index of the edge being split |
insertedNodeRelPosition | position of the inserted node relative to the lower index node of the edge |
elementIndexIsRemapped | indicates whether the operation has been recorded before element indices have been remapped, e.g. before elements are deleted (defaults to false) |
Definition at line 257 of file VertexMeshOperationRecorder.cpp.
References AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetIndex(), MutableElement< ELEMENT_DIM, SPACE_DIM >::GetNumEdges(), and EdgeRemapInfo::SetSplitProportions().
void VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >::RecordNewEdgeOperation | ( | VertexElement< ELEMENT_DIM, SPACE_DIM > * | pElement, |
const unsigned | edgeIndex | ||
) |
Records edge formation
pElement | |
edgeIndex | - new edge index |
Definition at line 425 of file VertexMeshOperationRecorder.cpp.
References AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetIndex(), and MutableElement< ELEMENT_DIM, SPACE_DIM >::GetNumEdges().
void VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >::RecordNodeMergeOperation | ( | const std::vector< unsigned > | oldIds, |
VertexElement< ELEMENT_DIM, SPACE_DIM > * | pElement, | ||
const std::pair< unsigned, unsigned > | mergedNodesPair, | ||
const bool | elementIndexIsRemapped = false |
||
) |
Record node merging (or edge shrinkage) event.
oldIds | Global Edge IDs prior to node merge |
pElement | Pointer to element associated with node merge |
mergedNodesPair | the index of the deleted node is stored in the second position |
elementIndexIsRemapped | indicates whether the operation has been recorded before element indices have been remapped, e.g. before elements are deleted (defaults to false) |
Definition at line 142 of file VertexMeshOperationRecorder.cpp.
References AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetIndex(), MutableElement< ELEMENT_DIM, SPACE_DIM >::GetLocalEdgeIndex(), and MutableElement< ELEMENT_DIM, SPACE_DIM >::GetNumEdges().
void VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >::RecordT1Swap | ( | T1SwapInfo< SPACE_DIM > & | rSwapInfo | ) |
Record T1 swap info.
rSwapInfo | information about a T1 swap |
Definition at line 58 of file VertexMeshOperationRecorder.cpp.
void VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >::RecordT2Swap | ( | T2SwapInfo< SPACE_DIM > & | rSwapInfo | ) |
Record T2 swap info.
rSwapInfo | information about a T2 swap |
Definition at line 76 of file VertexMeshOperationRecorder.cpp.
void VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >::RecordT3Swap | ( | T3SwapInfo< SPACE_DIM > & | rSwapInfo | ) |
Record T3 swap info.
rSwapInfo | information about a T3 swap |
Definition at line 94 of file VertexMeshOperationRecorder.cpp.
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inlineprivate |
Archive the object.
archive | the archive |
version | the current version of this class |
Definition at line 77 of file VertexMeshOperationRecorder.hpp.
References VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >::mCellDivisions, VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >::mEdgeOperations, VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >::mT1Swaps, VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >::mT2Swaps, and VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >::mT3Swaps.
void VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >::SetEdgeHelper | ( | EdgeHelper< SPACE_DIM > * | pEdgeHelper | ) |
Sets edge helper associated with the vertex mesh.
pEdgeHelper | pointer to an edge helper |
Definition at line 52 of file VertexMeshOperationRecorder.cpp.
Needed for serialization.
Definition at line 68 of file VertexMeshOperationRecorder.hpp.
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private |
Storage for cell division info.
Definition at line 96 of file VertexMeshOperationRecorder.hpp.
Referenced by VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >::serialize().
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private |
Stores all mesh operations.
Definition at line 99 of file VertexMeshOperationRecorder.hpp.
Referenced by VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >::serialize().
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Pointer to edge handler.
Definition at line 104 of file VertexMeshOperationRecorder.hpp.
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Storage for T1 swap info.
Definition at line 87 of file VertexMeshOperationRecorder.hpp.
Referenced by VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >::serialize().
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Storage for T2 swap info.
Definition at line 90 of file VertexMeshOperationRecorder.hpp.
Referenced by VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >::serialize().
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Storage for T3 swap info.
Definition at line 93 of file VertexMeshOperationRecorder.hpp.
Referenced by VertexMeshOperationRecorder< ELEMENT_DIM, SPACE_DIM >::serialize().