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Chaste Commit::333233612e3dcc941d260418acd7b5ccdc30390e
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#include <CellDataItemWriter.hpp>
Public Member Functions | |
CellDataItemWriter (std::string cellDataVariableName="") | |
double | GetCellDataForVtkOutput (CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
virtual void | VisitCell (CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
std::string | GetCellDataVariableName () const |
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AbstractCellWriter (const std::string &rFileName) | |
virtual c_vector< double, SPACE_DIM > | GetVectorCellDataForVtkOutput (CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
bool | GetOutputScalarData () |
bool | GetOutputVectorData () |
void | SetVtkCellDataName (std::string vtkCellDataName) |
void | SetVtkVectorCellDataName (std::string vtkCellDataName) |
std::string | GetVtkCellDataName () |
std::string | GetVtkVectorCellDataName () |
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AbstractCellBasedWriter (const std::string &rFileName) | |
virtual | ~AbstractCellBasedWriter () |
void | CloseFile () |
virtual void | OpenOutputFile (OutputFileHandler &rOutputFileHandler) |
void | OpenOutputFileForAppend (OutputFileHandler &rOutputFileHandler) |
virtual void | WriteTimeStamp () |
virtual void | WriteNewline () |
void | SetFileName (std::string fileName) |
std::string | GetFileName () |
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virtual | ~Identifiable () |
std::string | GetIdentifier () const |
Private Member Functions | |
template<class Archive > | |
void | serialize (Archive &archive, const unsigned int version) |
Private Attributes | |
std::string | mCellDataVariableName |
Friends | |
class | boost::serialization::access |
Additional Inherited Members | |
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bool | mOutputScalarData |
bool | mOutputVectorData |
std::string | mVtkCellDataName |
std::string | mVtkVectorCellDataName |
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std::string | mFileName |
out_stream | mpOutStream |
A class written using the visitor pattern for writing to file, for each cell, the level of a variable stored in CellData.
The output file is called cell[variable name].dat. If VTK is switched on, then the writer also specifies the VTK output for each cell, which is stored in the VTK cell data "Cell [variable name]".
Note: if VTK is switched on then everything in CellData will be output as VTK cell data already but this is the best way to output to a .dat file.
Definition at line 55 of file CellDataItemWriter.hpp.
CellDataItemWriter< ELEMENT_DIM, SPACE_DIM >::CellDataItemWriter | ( | std::string | cellDataVariableName = "" | ) |
Constructor.
cellDataVariableName | the item in CellData to output (defaults to "") |
Definition at line 40 of file CellDataItemWriter.cpp.
References CellDataItemWriter< ELEMENT_DIM, SPACE_DIM >::mCellDataVariableName, and AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >::mVtkCellDataName.
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virtual |
Overridden GetCellDataForVtkOutput() method.
Get a double associated with a cell. This method reduces duplication of code between the methods VisitCell() and AddVtkData().
pCell | a cell |
pCellPopulation | a pointer to the cell population owning the cell |
Reimplemented from AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 48 of file CellDataItemWriter.cpp.
std::string CellDataItemWriter< ELEMENT_DIM, SPACE_DIM >::GetCellDataVariableName | ( | ) | const |
Definition at line 78 of file CellDataItemWriter.cpp.
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inlineprivate |
Serialize the object and its member variables.
archive | the archive |
version | the current version of this class |
Definition at line 67 of file CellDataItemWriter.hpp.
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virtual |
Overridden VisitCell() method.
Visit a cell and write its cell data item.
Outputs a line of space-separated values of the form: ...[location index] [cell id] [x-pos] [y-pos] [z-pos] [cell data item]... with [y-pos] and [z-pos] included for 2 and 3 dimensional simulations, respectively.
This is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
pCell | a cell |
pCellPopulation | a pointer to the cell population owning the cell |
Implements AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 55 of file CellDataItemWriter.cpp.
References AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetLocationIndexUsingCell(), and AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetLocationOfCellCentre().
Needed for serialization.
Definition at line 59 of file CellDataItemWriter.hpp.
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private |
The item stored in CellData to output.
Definition at line 76 of file CellDataItemWriter.hpp.
Referenced by CellDataItemWriter< ELEMENT_DIM, SPACE_DIM >::CellDataItemWriter().