#include <DistributedQuadraticMesh.hpp>

Inheritance diagram for DistributedQuadraticMesh< DIM >:

Collaboration diagram for DistributedQuadraticMesh< DIM >:

Public Member Functions
	DistributedQuadraticMesh (DistributedTetrahedralMeshPartitionType::type partitioningMethod=DistributedTetrahedralMeshPartitionType::PARMETIS_LIBRARY)

virtual	~DistributedQuadraticMesh ()

void	ConstructFromMeshReader (AbstractMeshReader< DIM, DIM > &rMeshReader)

Public Member Functions inherited from DistributedTetrahedralMesh< DIM, DIM >
	DistributedTetrahedralMesh (DistributedTetrahedralMeshPartitionType::type partitioningMethod=DistributedTetrahedralMeshPartitionType::PARMETIS_LIBRARY)

virtual	~DistributedTetrahedralMesh ()

void	SetDistributedVectorFactory (DistributedVectorFactory *pFactory)

virtual void	ConstructFromMeshReader (AbstractMeshReader< ELEMENT_DIM, SPACE_DIM > &rMeshReader)

unsigned	GetNumLocalNodes () const

unsigned	GetNumHaloNodes () const

unsigned	GetNumLocalElements () const

unsigned	GetNumLocalBoundaryElements () const

unsigned	GetNumNodes () const

unsigned	GetNumAllNodes () const

unsigned	GetNumElements () const

DistributedTetrahedralMeshPartitionType::type	GetPartitionType () const

unsigned	GetNumBoundaryElements () const

void	GetHaloNodeIndices (std::vector< unsigned > &rHaloIndices) const

void	SetProcessRegion (ChasteCuboid< SPACE_DIM > *pRegion)

ChasteCuboid< SPACE_DIM > *	GetProcessRegion ()

bool	CalculateDesignatedOwnershipOfElement (unsigned elementIndex)

bool	CalculateDesignatedOwnershipOfBoundaryElement (unsigned faceIndex)

void	ConstructLinearMesh (unsigned width)

void	ConstructRectangularMesh (unsigned width, unsigned height, bool stagger=true)

void	ConstructCuboid (unsigned width, unsigned height, unsigned depth)

virtual void	Scale (const double xFactor=1.0, const double yFactor=1.0, const double zFactor=1.0)

Node< SPACE_DIM > *	GetNodeOrHaloNode (unsigned index) const

virtual ChasteCuboid< SPACE_DIM >	CalculateBoundingBox () const

virtual unsigned	GetNearestNodeIndex (const ChastePoint< SPACE_DIM > &rTestPoint)

virtual c_vector< double, 2 >	CalculateMinMaxEdgeLengths ()

void	Rotate (c_matrix< double, SPACE_DIM, SPACE_DIM > rotationMatrix)

void	Translate (const c_vector< double, SPACE_DIM > &rDisplacement)

HaloNodeIterator	GetHaloNodeIteratorBegin () const

HaloNodeIterator	GetHaloNodeIteratorEnd () const

Public Member Functions inherited from AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
ElementIterator	GetElementIteratorBegin (bool skipDeletedElements=true)

ElementIterator	GetElementIteratorEnd ()

	AbstractTetrahedralMesh ()

virtual	~AbstractTetrahedralMesh ()

unsigned	GetNumAllElements () const

unsigned	GetNumAllBoundaryElements () const

virtual unsigned	GetNumCableElements () const

virtual unsigned	GetNumVertices () const

virtual unsigned	GetMaximumNodeIndex ()

Element< ELEMENT_DIM, SPACE_DIM > *	GetElement (unsigned index) const

BoundaryElement< ELEMENT_DIM-1, SPACE_DIM > *	GetBoundaryElement (unsigned index) const

void	ConstructFromMesh (AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > &rOtherMesh)

BoundaryElementIterator	GetBoundaryElementIteratorBegin () const

BoundaryElementIterator	GetBoundaryElementIteratorEnd () const

virtual void	GetInverseJacobianForElement (unsigned elementIndex, c_matrix< double, SPACE_DIM, ELEMENT_DIM > &rJacobian, double &rJacobianDeterminant, c_matrix< double, ELEMENT_DIM, SPACE_DIM > &rInverseJacobian) const

virtual void	GetWeightedDirectionForBoundaryElement (unsigned elementIndex, c_vector< double, SPACE_DIM > &rWeightedDirection, double &rJacobianDeterminant) const

void	CheckOutwardNormals ()

void	ConstructRegularSlabMesh (double spaceStep, double width, double height=0, double depth=0)

void	ConstructRegularSlabMeshWithDimensionSplit (unsigned dimension, double spaceStep, double width, double height=0, double depth=0)

unsigned	CalculateMaximumNodeConnectivityPerProcess () const

void	CalculateNodeExchange (std::vector< std::vector< unsigned > > &rNodesToSendPerProcess, std::vector< std::vector< unsigned > > &rNodesToReceivePerProcess)

unsigned	GetContainingElementIndex (const ChastePoint< SPACE_DIM > &rTestPoint, bool strict=false, std::set< unsigned > testElements=std::set< unsigned >(), bool onlyTryWithTestElements=false)

unsigned	GetNearestElementIndexFromTestElements (const ChastePoint< SPACE_DIM > &rTestPoint, std::set< unsigned > testElements)

Public Member Functions inherited from AbstractMesh< ELEMENT_DIM, SPACE_DIM >
NodeIterator	GetNodeIteratorBegin (bool skipDeletedNodes=true)

NodeIterator	GetNodeIteratorEnd ()

	AbstractMesh ()

virtual	~AbstractMesh ()

unsigned	GetNumBoundaryNodes () const

unsigned	GetNumNodeAttributes () const

Node< SPACE_DIM > *	GetNode (unsigned index) const

Node< SPACE_DIM > *	GetNodeFromPrePermutationIndex (unsigned index) const

virtual void	ReadNodesPerProcessorFile (const std::string &rNodesPerProcessorFile)

virtual DistributedVectorFactory *	GetDistributedVectorFactory ()

virtual void	PermuteNodes ()

BoundaryNodeIterator	GetBoundaryNodeIteratorBegin () const

BoundaryNodeIterator	GetBoundaryNodeIteratorEnd () const

std::string	GetMeshFileBaseName () const

bool	IsMeshOnDisk () const

const std::vector< unsigned > &	rGetNodePermutation () const

virtual c_vector< double, SPACE_DIM >	GetVectorFromAtoB (const c_vector< double, SPACE_DIM > &rLocationA, const c_vector< double, SPACE_DIM > &rLocationB)

double	GetDistanceBetweenNodes (unsigned indexA, unsigned indexB)

virtual double	GetWidth (const unsigned &rDimension) const

void	Translate (const double xMovement=0.0, const double yMovement=0.0, const double zMovement=0.0)

void	Rotate (c_vector< double, 3 > axis, double angle)

void	RotateX (const double theta)

void	RotateY (const double theta)

void	RotateZ (const double theta)

void	Rotate (double theta)

virtual void	RefreshMesh ()

bool	IsMeshChanging () const

unsigned	CalculateMaximumContainingElementsPerProcess () const

void	SetMeshHasChangedSinceLoading ()

Private Member Functions
template<class Archive >
void	serialize (Archive &archive, const unsigned int version)

Friends
class	boost::serialization::access

Additional Inherited Members
Public Types inherited from DistributedTetrahedralMesh< DIM, DIM >
typedef std::vector< Node< SPACE_DIM > * >::const_iterator	HaloNodeIterator

Public Types inherited from AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
typedef std::vector< BoundaryElement< ELEMENT_DIM-1, SPACE_DIM > * >::const_iterator	BoundaryElementIterator

Public Types inherited from AbstractMesh< ELEMENT_DIM, SPACE_DIM >
typedef std::vector< Node< SPACE_DIM > * >::const_iterator	BoundaryNodeIterator

Protected Member Functions inherited from DistributedTetrahedralMesh< DIM, DIM >
unsigned	SolveNodeMapping (unsigned index) const

unsigned	SolveElementMapping (unsigned index) const

unsigned	SolveBoundaryElementMapping (unsigned index) const

Protected Member Functions inherited from AbstractMesh< ELEMENT_DIM, SPACE_DIM >
ChasteCuboid< SPACE_DIM >	CalculateBoundingBox (const std::vector< Node< SPACE_DIM > * > &rNodes) const

Protected Attributes inherited from AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
bool	mMeshIsLinear

std::vector< Element< ELEMENT_DIM, SPACE_DIM > * >	mElements

std::vector< BoundaryElement< ELEMENT_DIM-1, SPACE_DIM > * >	mBoundaryElements

Protected Attributes inherited from AbstractMesh< ELEMENT_DIM, SPACE_DIM >
std::vector< Node< SPACE_DIM > * >	mNodes

std::vector< Node< SPACE_DIM > * >	mBoundaryNodes

DistributedVectorFactory *	mpDistributedVectorFactory

std::vector< unsigned >	mNodePermutation

std::string	mMeshFileBaseName

bool	mMeshChangesDuringSimulation

Detailed Description

template<unsigned DIM>
class DistributedQuadraticMesh< DIM >

Parallel implementation of a quadratic mesh Nodes are distributed such that each process has

A set of nodes (possibly reordered) with contiguous global indices
A local copy of all the elements supporting those nodes
A local copy of ghost/halo nodes which are all the nodes used in the supporting elements, but not owned outright.

Definition at line 64 of file DistributedQuadraticMesh.hpp.

Constructor & Destructor Documentation

◆ DistributedQuadraticMesh()

template<unsigned DIM>

DistributedQuadraticMesh< DIM >::DistributedQuadraticMesh ( DistributedTetrahedralMeshPartitionType::type partitioningMethod = DistributedTetrahedralMeshPartitionType::PARMETIS_LIBRARY )

Constructor.

Parameters

partitioningMethod defaults to PARMETIS_LIBRARY, Nb: This is should have the same default behaviour as DistributedTetrahedralMesh

Definition at line 40 of file DistributedQuadraticMesh.cpp.

◆ ~DistributedQuadraticMesh()

template<unsigned DIM>

DistributedQuadraticMesh< DIM >::~DistributedQuadraticMesh ( )

virtual

Destructor.

Definition at line 47 of file DistributedQuadraticMesh.cpp.

Member Function Documentation

◆ ConstructFromMeshReader()

template<unsigned DIM>

void DistributedQuadraticMesh< DIM >::ConstructFromMeshReader ( AbstractMeshReader< DIM, DIM > & rMeshReader )

Construct the mesh using a MeshReader.

Parameters

rMeshReader the mesh reader

Definition at line 52 of file DistributedQuadraticMesh.cpp.

References QuadraticMeshHelper< DIM >::AddInternalNodesToBoundaryElements(), QuadraticMeshHelper< DIM >::AddInternalNodesToElements(), QuadraticMeshHelper< DIM >::CheckBoundaryElements(), DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::ConstructFromMeshReader(), EXCEPTION, and TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >::GetOrderOfElements().

◆ serialize()

template<unsigned DIM>

template<class Archive >

void DistributedQuadraticMesh< DIM >::serialize	(	Archive &	archive,
		const unsigned int	version
	)

inlineprivate

Serialize the mesh.

Parameters

archive	the archive
version	the current version of this class

Definition at line 75 of file DistributedQuadraticMesh.hpp.

Friends And Related Symbol Documentation

◆ boost::serialization::access

template<unsigned DIM>

friend class boost::serialization::access

friend

Needed for serialization.

Definition at line 67 of file DistributedQuadraticMesh.hpp.

The documentation for this class was generated from the following files:

mesh/src/common/DistributedQuadraticMesh.hpp
mesh/src/common/DistributedQuadraticMesh.cpp

Public Member Functions

Private Member Functions

Friends

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ DistributedQuadraticMesh()

◆ ~DistributedQuadraticMesh()

Member Function Documentation

◆ ConstructFromMeshReader()

◆ serialize()

Friends And Related Symbol Documentation

◆ boost::serialization::access