AbstractMesh() | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
AbstractTetrahedralMesh() | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
boost::serialization::access | DistributedQuadraticMesh< DIM > | friend |
BoundaryElementIterator typedef | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
BoundaryNodeIterator typedef | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
CalculateBoundingBox() const | DistributedTetrahedralMesh< DIM, DIM > | virtual |
AbstractTetrahedralMesh::CalculateBoundingBox(const std::vector< Node< SPACE_DIM > * > &rNodes) const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | protected |
CalculateDesignatedOwnershipOfBoundaryElement(unsigned faceIndex) | DistributedTetrahedralMesh< DIM, DIM > | virtual |
CalculateDesignatedOwnershipOfElement(unsigned elementIndex) | DistributedTetrahedralMesh< DIM, DIM > | virtual |
CalculateMaximumContainingElementsPerProcess() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
CalculateMaximumNodeConnectivityPerProcess() const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
CalculateMinMaxEdgeLengths() | DistributedTetrahedralMesh< DIM, DIM > | virtual |
CalculateNodeExchange(std::vector< std::vector< unsigned > > &rNodesToSendPerProcess, std::vector< std::vector< unsigned > > &rNodesToReceivePerProcess) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
CheckOutwardNormals() | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
ComputeMeshPartitioning(AbstractMeshReader< ELEMENT_DIM, SPACE_DIM > &rMeshReader, std::set< unsigned > &rNodesOwned, std::set< unsigned > &rHaloNodesOwned, std::set< unsigned > &rElementsOwned, std::vector< unsigned > &rProcessorsOffset) | DistributedTetrahedralMesh< DIM, DIM > | private |
ConstructCuboid(unsigned width, unsigned height, unsigned depth) | DistributedTetrahedralMesh< DIM, DIM > | virtual |
ConstructFromMesh(AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > &rOtherMesh) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
ConstructFromMeshReader(AbstractMeshReader< DIM, DIM > &rMeshReader) | DistributedQuadraticMesh< DIM > | |
DistributedTetrahedralMesh< DIM, DIM >::ConstructFromMeshReader(AbstractMeshReader< ELEMENT_DIM, SPACE_DIM > &rMeshReader) | DistributedTetrahedralMesh< DIM, DIM > | virtual |
ConstructLinearMesh(unsigned width) | DistributedTetrahedralMesh< DIM, DIM > | virtual |
ConstructRectangularMesh(unsigned width, unsigned height, bool stagger=true) | DistributedTetrahedralMesh< DIM, DIM > | virtual |
ConstructRegularSlabMesh(double spaceStep, double width, double height=0, double depth=0) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
ConstructRegularSlabMeshWithDimensionSplit(unsigned dimension, double spaceStep, double width, double height=0, double depth=0) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
DistributedQuadraticMesh(DistributedTetrahedralMeshPartitionType::type partitioningMethod=DistributedTetrahedralMeshPartitionType::PARMETIS_LIBRARY) | DistributedQuadraticMesh< DIM > | |
DistributedTetrahedralMesh(DistributedTetrahedralMeshPartitionType::type partitioningMethod=DistributedTetrahedralMeshPartitionType::PARMETIS_LIBRARY) | DistributedTetrahedralMesh< DIM, DIM > | |
GetBoundaryElement(unsigned index) const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
GetBoundaryElementIteratorBegin() const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
GetBoundaryElementIteratorEnd() const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
GetBoundaryNodeIteratorBegin() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
GetBoundaryNodeIteratorEnd() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
GetContainingElementIndex(const ChastePoint< SPACE_DIM > &rTestPoint, bool strict=false, std::set< unsigned > testElements=std::set< unsigned >(), bool onlyTryWithTestElements=false) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
GetDistanceBetweenNodes(unsigned indexA, unsigned indexB) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
GetDistributedVectorFactory() | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
GetElement(unsigned index) const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
GetElementIteratorBegin(bool skipDeletedElements=true) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | inline |
GetElementIteratorEnd() | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | inline |
GetHaloNodeIndices(std::vector< unsigned > &rHaloIndices) const | DistributedTetrahedralMesh< DIM, DIM > | virtual |
GetHaloNodeIteratorBegin() const | DistributedTetrahedralMesh< DIM, DIM > | |
GetHaloNodeIteratorEnd() const | DistributedTetrahedralMesh< DIM, DIM > | |
GetInverseJacobianForElement(unsigned elementIndex, c_matrix< double, SPACE_DIM, ELEMENT_DIM > &rJacobian, double &rJacobianDeterminant, c_matrix< double, ELEMENT_DIM, SPACE_DIM > &rInverseJacobian) const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
GetMaximumNodeIndex() | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
GetMeshFileBaseName() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
GetNearestElementIndexFromTestElements(const ChastePoint< SPACE_DIM > &rTestPoint, std::set< unsigned > testElements) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
GetNearestNodeIndex(const ChastePoint< SPACE_DIM > &rTestPoint) | DistributedTetrahedralMesh< DIM, DIM > | virtual |
GetNode(unsigned index) const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
GetNodeFromPrePermutationIndex(unsigned index) const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
GetNodeIteratorBegin(bool skipDeletedNodes=true) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | inline |
GetNodeIteratorEnd() | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | inline |
GetNodeOrHaloNode(unsigned index) const | DistributedTetrahedralMesh< DIM, DIM > | virtual |
GetNumAllBoundaryElements() const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
GetNumAllElements() const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | |
GetNumAllNodes() const | DistributedTetrahedralMesh< DIM, DIM > | virtual |
GetNumBoundaryElements() const | DistributedTetrahedralMesh< DIM, DIM > | virtual |
GetNumBoundaryNodes() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
GetNumCableElements() const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
GetNumElements() const | DistributedTetrahedralMesh< DIM, DIM > | virtual |
GetNumHaloNodes() const | DistributedTetrahedralMesh< DIM, DIM > | |
GetNumLocalBoundaryElements() const | DistributedTetrahedralMesh< DIM, DIM > | virtual |
GetNumLocalElements() const | DistributedTetrahedralMesh< DIM, DIM > | virtual |
GetNumLocalNodes() const | DistributedTetrahedralMesh< DIM, DIM > | |
GetNumNodeAttributes() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
GetNumNodes() const | DistributedTetrahedralMesh< DIM, DIM > | virtual |
GetNumVertices() const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
GetPartitionType() const | DistributedTetrahedralMesh< DIM, DIM > | |
GetProcessRegion() | DistributedTetrahedralMesh< DIM, DIM > | |
GetVectorFromAtoB(const c_vector< double, SPACE_DIM > &rLocationA, const c_vector< double, SPACE_DIM > &rLocationB) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
GetWeightedDirectionForBoundaryElement(unsigned elementIndex, c_vector< double, SPACE_DIM > &rWeightedDirection, double &rJacobianDeterminant) const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
GetWidth(const unsigned &rDimension) const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
HaloNodeIterator typedef | DistributedTetrahedralMesh< DIM, DIM > | |
IsMeshChanging() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
IsMeshOnDisk() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
load(Archive &archive, const unsigned int version) | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | inlineprivate |
mBoundaryElements | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protected |
mBoundaryElementsMapping | DistributedTetrahedralMesh< DIM, DIM > | private |
mBoundaryNodes | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | protected |
mElements | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protected |
mElementsMapping | DistributedTetrahedralMesh< DIM, DIM > | private |
mHaloNodes | DistributedTetrahedralMesh< DIM, DIM > | private |
mHaloNodesMapping | DistributedTetrahedralMesh< DIM, DIM > | private |
mMeshChangesDuringSimulation | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | protected |
mMeshFileBaseName | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | protected |
mMeshIsLinear | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | protected |
mNodePermutation | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | protected |
mNodes | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | protected |
mNodesMapping | DistributedTetrahedralMesh< DIM, DIM > | private |
mPartitioning | DistributedTetrahedralMesh< DIM, DIM > | private |
mpDistributedVectorFactory | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | protected |
mpSpaceRegion | DistributedTetrahedralMesh< DIM, DIM > | private |
mTotalNumBoundaryElements | DistributedTetrahedralMesh< DIM, DIM > | private |
mTotalNumElements | DistributedTetrahedralMesh< DIM, DIM > | private |
mTotalNumNodes | DistributedTetrahedralMesh< DIM, DIM > | private |
ParMetisLibraryNodeAndElementPartitioning(AbstractMeshReader< ELEMENT_DIM, SPACE_DIM > &rMeshReader, std::set< unsigned > &rElementsOwned, std::set< unsigned > &rNodesOwned, std::set< unsigned > &rHaloNodesOwned, std::vector< unsigned > &rProcessorsOffset) | DistributedTetrahedralMesh< DIM, DIM > | private |
PermuteNodes() | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
ReadNodesPerProcessorFile(const std::string &rNodesPerProcessorFile) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
RefreshMesh() | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
RegisterBoundaryElement(unsigned index) | DistributedTetrahedralMesh< DIM, DIM > | private |
RegisterElement(unsigned index) | DistributedTetrahedralMesh< DIM, DIM > | private |
RegisterHaloNode(unsigned index) | DistributedTetrahedralMesh< DIM, DIM > | private |
RegisterNode(unsigned index) | DistributedTetrahedralMesh< DIM, DIM > | private |
ReorderNodes() | DistributedTetrahedralMesh< DIM, DIM > | private |
rGetNodePermutation() const | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
Rotate(c_matrix< double, SPACE_DIM, SPACE_DIM > rotationMatrix) | DistributedTetrahedralMesh< DIM, DIM > | virtual |
AbstractTetrahedralMesh::Rotate(c_vector< double, 3 > axis, double angle) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
AbstractTetrahedralMesh::Rotate(double theta) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
RotateX(const double theta) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
RotateY(const double theta) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
RotateZ(const double theta) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
save(Archive &archive, const unsigned int version) const | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | inlineprivate |
Scale(const double xFactor=1.0, const double yFactor=1.0, const double zFactor=1.0) | DistributedTetrahedralMesh< DIM, DIM > | virtual |
serialize(Archive &archive, const unsigned int version) | DistributedQuadraticMesh< DIM > | inlineprivate |
SetDistributedVectorFactory(DistributedVectorFactory *pFactory) | DistributedTetrahedralMesh< DIM, DIM > | virtual |
SetElementOwnerships() | DistributedTetrahedralMesh< DIM, DIM > | privatevirtual |
SetMeshHasChangedSinceLoading() | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
SetProcessRegion(ChasteCuboid< SPACE_DIM > *pRegion) | DistributedTetrahedralMesh< DIM, DIM > | |
SolveBoundaryElementMapping(unsigned index) const | DistributedTetrahedralMesh< DIM, DIM > | protectedvirtual |
SolveElementMapping(unsigned index) const | DistributedTetrahedralMesh< DIM, DIM > | protectedvirtual |
SolveNodeMapping(unsigned index) const | DistributedTetrahedralMesh< DIM, DIM > | protectedvirtual |
Translate(const c_vector< double, SPACE_DIM > &rDisplacement) | DistributedTetrahedralMesh< DIM, DIM > | virtual |
AbstractTetrahedralMesh::Translate(const double xMovement=0.0, const double yMovement=0.0, const double zMovement=0.0) | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | |
~AbstractMesh() | AbstractMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
~AbstractTetrahedralMesh() | AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > | virtual |
~DistributedQuadraticMesh() | DistributedQuadraticMesh< DIM > | virtual |
~DistributedTetrahedralMesh() | DistributedTetrahedralMesh< DIM, DIM > | virtual |