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Chaste Commit::333233612e3dcc941d260418acd7b5ccdc30390e
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#include <CellMutationStatesWriter.hpp>
Public Member Functions | |
CellMutationStatesWriter () | |
double | GetCellDataForVtkOutput (CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
virtual void | VisitCell (CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
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AbstractCellWriter (const std::string &rFileName) | |
virtual c_vector< double, SPACE_DIM > | GetVectorCellDataForVtkOutput (CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
bool | GetOutputScalarData () |
bool | GetOutputVectorData () |
void | SetVtkCellDataName (std::string vtkCellDataName) |
void | SetVtkVectorCellDataName (std::string vtkCellDataName) |
std::string | GetVtkCellDataName () |
std::string | GetVtkVectorCellDataName () |
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AbstractCellBasedWriter (const std::string &rFileName) | |
virtual | ~AbstractCellBasedWriter () |
void | CloseFile () |
virtual void | OpenOutputFile (OutputFileHandler &rOutputFileHandler) |
void | OpenOutputFileForAppend (OutputFileHandler &rOutputFileHandler) |
virtual void | WriteTimeStamp () |
virtual void | WriteNewline () |
void | SetFileName (std::string fileName) |
std::string | GetFileName () |
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virtual | ~Identifiable () |
std::string | GetIdentifier () const |
Private Member Functions | |
template<class Archive > | |
void | serialize (Archive &archive, const unsigned int version) |
Friends | |
class | boost::serialization::access |
Additional Inherited Members | |
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bool | mOutputScalarData |
bool | mOutputVectorData |
std::string | mVtkCellDataName |
std::string | mVtkVectorCellDataName |
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std::string | mFileName |
out_stream | mpOutStream |
A class written using the visitor pattern for writing cell mutation states to file.
The output file is called results.vizmutationstates by default. If VTK is switched on, then the writer also specifies the VTK output for each cell, which is stored in the VTK cell data "Mutation states" by default.
Definition at line 51 of file CellMutationStatesWriter.hpp.
CellMutationStatesWriter< ELEMENT_DIM, SPACE_DIM >::CellMutationStatesWriter | ( | ) |
Default constructor.
Definition at line 42 of file CellMutationStatesWriter.cpp.
References AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >::mVtkCellDataName.
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virtual |
Get a double associated with a cell. This method reduces duplication of code between the methods VisitCell() and AddVtkData().
By default this method returns a DOUBLE_UNSET, but it may be overridden in subclasses
pCell | a cell |
pCellPopulation | a pointer to the cell population owning the cell. |
Reimplemented from AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 49 of file CellMutationStatesWriter.cpp.
References CellPropertyCollection::GetProperties(), CellPropertyCollection::GetProperty(), and CellPropertyCollection::GetSize().
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inlineprivate |
Serialize the object and its member variables.
archive | the archive |
version | the current version of this class |
Definition at line 63 of file CellMutationStatesWriter.hpp.
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virtual |
Overridden VisitCell() method.
Visit a cell and write its mutation state, as given by this property's member mColour.
Outputs a line of space-separated values of the form: ...[cell mutation state] ...
This is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
pCell | a cell |
pCellPopulation | a pointer to the cell population owning the cell |
Implements AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 66 of file CellMutationStatesWriter.cpp.
References CellPropertyCollection::GetProperties(), CellPropertyCollection::GetProperty(), and CellPropertyCollection::GetSize().
Needed for serialization.
Definition at line 55 of file CellMutationStatesWriter.hpp.