Chaste Commit::ca8ccdedf819b6e02855bc0e8e6f50bdecbc5208
CellMutationStatesWriter.cpp
1/*
2
3Copyright (c) 2005-2024, University of Oxford.
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10This file is part of Chaste.
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12Redistribution and use in source and binary forms, with or without
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14 * Redistributions of source code must retain the above copyright notice,
15 this list of conditions and the following disclaimer.
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19 * Neither the name of the University of Oxford nor the names of its
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21 software without specific prior written permission.
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23THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
24AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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33
34*/
35
36#include "CellMutationStatesWriter.hpp"
37
38#include "AbstractCellPopulation.hpp"
39#include "CellLabel.hpp"
40
41template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
43 : AbstractCellWriter<ELEMENT_DIM, SPACE_DIM>("results.vizmutationstates")
44{
45 this->mVtkCellDataName = "Mutation states";
46}
47
48template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
50{
51 double mutation_state = pCell->GetMutationState()->GetColour();
52
53 CellPropertyCollection collection = pCell->rGetCellPropertyCollection();
54 CellPropertyCollection label_collection = collection.GetProperties<CellLabel>();
55
56 if (label_collection.GetSize() == 1)
57 {
58 boost::shared_ptr<CellLabel> p_label = boost::static_pointer_cast<CellLabel>(label_collection.GetProperty());
59 mutation_state = p_label->GetColour();
60 }
61
62 return mutation_state;
63}
64
65template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
67{
68 double mutation_state = pCell->GetMutationState()->GetColour();
69
71 CellPropertyCollection collection = pCell->rGetCellPropertyCollection();
72 CellPropertyCollection label_collection = collection.GetProperties<CellLabel>();
73
74 if (label_collection.GetSize() == 1)
75 {
76 boost::shared_ptr<CellLabel> p_label = boost::static_pointer_cast<CellLabel>(label_collection.GetProperty());
77 mutation_state = p_label->GetColour();
78 }
79
80 *this->mpOutStream << mutation_state << " ";
81}
82
83// Explicit instantiation
90
92// Declare identifier for the serializer
#define EXPORT_TEMPLATE_CLASS_ALL_DIMS(CLASS)
double GetCellDataForVtkOutput(CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)
virtual void VisitCell(CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)
boost::shared_ptr< AbstractCellProperty > GetProperty() const
CellPropertyCollection GetProperties() const