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Chaste Commit::333233612e3dcc941d260418acd7b5ccdc30390e
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#include <CellAppliedForceWriter.hpp>
Public Member Functions | |
CellAppliedForceWriter () | |
c_vector< double, SPACE_DIM > | GetVectorCellDataForVtkOutput (CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
virtual void | VisitCell (CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
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AbstractCellWriter (const std::string &rFileName) | |
virtual double | GetCellDataForVtkOutput (CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
bool | GetOutputScalarData () |
bool | GetOutputVectorData () |
void | SetVtkCellDataName (std::string vtkCellDataName) |
void | SetVtkVectorCellDataName (std::string vtkCellDataName) |
std::string | GetVtkCellDataName () |
std::string | GetVtkVectorCellDataName () |
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AbstractCellBasedWriter (const std::string &rFileName) | |
virtual | ~AbstractCellBasedWriter () |
void | CloseFile () |
virtual void | OpenOutputFile (OutputFileHandler &rOutputFileHandler) |
void | OpenOutputFileForAppend (OutputFileHandler &rOutputFileHandler) |
virtual void | WriteTimeStamp () |
virtual void | WriteNewline () |
void | SetFileName (std::string fileName) |
std::string | GetFileName () |
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virtual | ~Identifiable () |
std::string | GetIdentifier () const |
Private Member Functions | |
template<class Archive > | |
void | serialize (Archive &archive, const unsigned int version) |
Friends | |
class | boost::serialization::access |
Additional Inherited Members | |
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bool | mOutputScalarData |
bool | mOutputVectorData |
std::string | mVtkCellDataName |
std::string | mVtkVectorCellDataName |
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std::string | mFileName |
out_stream | mpOutStream |
A class written using the visitor pattern for writing the applied force on each cell to file. This class is designed for use with a NodeBasedCellPopulation (or its subclasses) only; if used with other cell populations, the writer will output DOUBLE_UNSET for each component of cell's applied force.
The output file is called cellappliedforce.dat by default. If VTK is switched on, then the writer also specifies the VTK output for each cell, which is stored in the VTK cell data "Cell applied force" by default.
Definition at line 54 of file CellAppliedForceWriter.hpp.
CellAppliedForceWriter< ELEMENT_DIM, SPACE_DIM >::CellAppliedForceWriter | ( | ) |
Default constructor.
Definition at line 41 of file CellAppliedForceWriter.cpp.
References AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >::mOutputScalarData, AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >::mOutputVectorData, and AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >::mVtkVectorCellDataName.
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virtual |
Overridden GetVectorCellDataForVtkOutput() method.
Get a c_vector associated with a cell. This method reduces duplication of code between the methods VisitCell() and AddVtkData().
pCell | a cell |
pCellPopulation | a pointer to the cell population owning the cell. |
Reimplemented from AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 50 of file CellAppliedForceWriter.cpp.
References DOUBLE_UNSET, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetLocationIndexUsingCell(), and AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetNode().
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inlineprivate |
Serialize the object and its member variables.
archive | the archive |
version | the current version of this class |
Definition at line 68 of file CellAppliedForceWriter.hpp.
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virtual |
Overridden VisitCell() method.
Visit a cell and write its applied force.
Outputs a line of space-separated values of the form: ...[location index] [cell id] [x-pos] [y-pos] [z-pos] [x-force] [y-force] [z-force] ... with [y-<>] and [z-<>] included for 2 and 3 dimensional simulations, respectively.
This is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
pCell | a cell |
pCellPopulation | a pointer to the cell population owning the cell |
Implements AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 64 of file CellAppliedForceWriter.cpp.
References AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetLocationIndexUsingCell(), and AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetLocationOfCellCentre().
Needed for serialization.
Definition at line 59 of file CellAppliedForceWriter.hpp.