Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
CellAppliedForceWriter.cpp
1/*
2
3Copyright (c) 2005-2024, University of Oxford.
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10This file is part of Chaste.
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34*/
35
36#include "CellAppliedForceWriter.hpp"
37#include "NodeBasedCellPopulation.hpp"
39
40template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
42 : AbstractCellWriter<ELEMENT_DIM, SPACE_DIM>("cellappliedforce.dat")
43{
44 this->mVtkVectorCellDataName = "Cell applied force";
45 this->mOutputScalarData = false;
46 this->mOutputVectorData = true;
47}
48
49template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
51{
52 c_vector<double, SPACE_DIM> applied_force = scalar_vector<double>(SPACE_DIM, DOUBLE_UNSET);
53
54 if (dynamic_cast<NodeBasedCellPopulation<SPACE_DIM>*>(pCellPopulation))
55 {
56 unsigned node_index = pCellPopulation->GetLocationIndexUsingCell(pCell);
57 applied_force = pCellPopulation->GetNode(node_index)->rGetAppliedForce();
58 }
59
60 return applied_force;
61}
62
63template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
65{
66 unsigned location_index = pCellPopulation->GetLocationIndexUsingCell(pCell);
67 unsigned cell_id = pCell->GetCellId();
68 c_vector<double, SPACE_DIM> cell_location = pCellPopulation->GetLocationOfCellCentre(pCell);
69 c_vector<double, SPACE_DIM> applied_force = GetVectorCellDataForVtkOutput(pCell, pCellPopulation);
70
71 *this->mpOutStream << location_index << " " << cell_id << " ";
72 for (unsigned i=0; i<SPACE_DIM; i++)
73 {
74 *this->mpOutStream << cell_location[i] << " ";
75 }
76 for (unsigned i=0; i<SPACE_DIM; i++)
77 {
78 *this->mpOutStream << applied_force[i] << " ";
79 }
80}
81
82// Explicit instantiation
83template class CellAppliedForceWriter<1,1>;
84template class CellAppliedForceWriter<1,2>;
85template class CellAppliedForceWriter<2,2>;
86template class CellAppliedForceWriter<1,3>;
87template class CellAppliedForceWriter<2,3>;
88template class CellAppliedForceWriter<3,3>;
89
91// Declare identifier for the serializer
const double DOUBLE_UNSET
Definition Exception.hpp:57
#define EXPORT_TEMPLATE_CLASS_ALL_DIMS(CLASS)
virtual Node< SPACE_DIM > * GetNode(unsigned index)=0
virtual c_vector< double, SPACE_DIM > GetLocationOfCellCentre(CellPtr pCell)=0
unsigned GetLocationIndexUsingCell(CellPtr pCell)
std::string mVtkVectorCellDataName
virtual void VisitCell(CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)
c_vector< double, SPACE_DIM > GetVectorCellDataForVtkOutput(CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)