AbstractSrnModel.cpp

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*/
 
#include "AbstractSrnModel.hpp"
 
AbstractSrnModel::AbstractSrnModel()
    : mSimulatedToTime(SimulationTime::Instance()->GetTime()),
      mEdgeLocalIndex(UNSIGNED_UNSET),
      mIsEdgeBasedModel(false)
{
}
 
AbstractSrnModel::~AbstractSrnModel()
{
}
 
void AbstractSrnModel::Initialise()
{
}
 
void AbstractSrnModel::InitialiseDaughterCell()
{
}
 
AbstractSrnModel::AbstractSrnModel(const AbstractSrnModel& rModel)
    : mSimulatedToTime(rModel.GetSimulatedToTime()), mIsEdgeBasedModel(rModel.mIsEdgeBasedModel)
{
    /*
     * Set each member variable of the new SRN model that inherits
     * its value from the parent.
     *
     * Note 1: some of the new SRN model's member variables
     * will already have been correctly initialized in its constructor.
     *
     * Note 2: one or more of the new SRN model's member variables
     * may be set/overwritten as soon as InitialiseDaughterCell() is called on
     * the new SRN model.
     *
     * Note 3: Only set the variables defined in this class. Variables defined
     * in parent classes will be defined there.
     */
}
 
void AbstractSrnModel::ResetForDivision()
{
    // Make sure we're at the current time
    SimulateToCurrentTime();
    assert(mSimulatedToTime == SimulationTime::Instance()->GetTime());
}
 
void AbstractSrnModel::SetCell(CellPtr pCell)
{
    mpCell = pCell;
}
 
CellPtr AbstractSrnModel::GetCell()
{
    assert(mpCell != nullptr);
    return mpCell;
}
 
void AbstractSrnModel::SetSimulatedToTime(double simulatedToTime)
{
    mSimulatedToTime = simulatedToTime;
}
 
double AbstractSrnModel::GetSimulatedToTime() const
{
    return mSimulatedToTime;
}
 
void AbstractSrnModel::OutputSrnModelInfo(out_stream& rParamsFile)
{
    std::string srn_model_type = GetIdentifier();
 
    *rParamsFile << "\t\t<" << srn_model_type << ">\n";
    OutputSrnModelParameters(rParamsFile);
    *rParamsFile << "\t\t</" << srn_model_type << ">\n";
}
 
void AbstractSrnModel::OutputSrnModelParameters(out_stream& rParamsFile)
{
}
 
void AbstractSrnModel::SetEdgeLocalIndex(unsigned index)
{
    this->mEdgeLocalIndex = index;
}
 
unsigned AbstractSrnModel::GetEdgeLocalIndex()
{
    return this->mEdgeLocalIndex;
}
 
bool AbstractSrnModel::HasEdgeModel() const
{
    return this->mIsEdgeBasedModel;
}
 
void AbstractSrnModel::SetEdgeModelIndicator(const bool isEdgeModel)
{
    this->mIsEdgeBasedModel = isEdgeModel;
}
 
/*
 * We exclude the following from coverage, as these methods are implemented elsewhere and tested accordingly
 * \todo These should have been declared abstract/virtual with void ScaleSrnVariables(const double theta) = 0; or similar
 * ALERT: not all concrete class implement these methods!
 */
// LCOV_EXCL_START
void AbstractSrnModel::ScaleSrnVariables(const double theta)
{
}
 
void AbstractSrnModel::AddSrnQuantities(AbstractSrnModel* pOtherSrn,
                                        const double scale)
{
}
 
void AbstractSrnModel::AddShrunkEdgeSrn(AbstractSrnModel* pShrunkEdgeSrn)
{
}
 
void AbstractSrnModel::AddMergedEdgeSrn(AbstractSrnModel* pMergedEdgeSrn)
{}
 
void AbstractSrnModel::AddShrunkEdgeToInterior(AbstractSrnModel* pShrunkEdgeSrn)
{}
 
void AbstractSrnModel::SplitEdgeSrn(const double relativePosition)
{}
// LCOV_EXCL_STOP