AbstractCardiacCell(boost::shared_ptr< AbstractIvpOdeSolver > pOdeSolver, unsigned numberOfStateVariables, unsigned voltageIndex, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus) | AbstractCardiacCell | |
AbstractCardiacCellInterface(boost::shared_ptr< AbstractIvpOdeSolver > pOdeSolver, unsigned voltageIndex, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus) | AbstractCardiacCellInterface | |
AbstractOdeSystem(unsigned numberOfStateVariables) | AbstractOdeSystem | |
AbstractParameterisedSystem(unsigned numberOfStateVariables) | AbstractParameterisedSystem< std::vector< double > > | |
AbstractUntemplatedParameterisedSystem(unsigned numberOfStateVariables) | AbstractUntemplatedParameterisedSystem | |
AdjustOutOfRangeSlowValues(std::vector< double > &rSlowValues) | AbstractCardiacCell | virtual |
Asurf | CorriasBuistICCModified | private |
Asurf_in_cm_square | CorriasBuistICCModified | private |
b | CorriasBuistICCModified | private |
boost::serialization::access (defined in CorriasBuistICCModified) | CorriasBuistICCModified | friend |
Ca_o | CorriasBuistICCModified | private |
CalculateRootFunction(double time, const std::vector< double > &rY) | AbstractOdeSystem | virtual |
CalculateStoppingEvent(double time, const std::vector< double > &rY) | AbstractOdeSystem | virtual |
CheckForArchiveFix() | AbstractCardiacCell | private |
CheckParametersOnLoad(const std::vector< double > &rParameters, const std::vector< std::string > &rParameterNames) | AbstractParameterisedSystem< std::vector< double > > | protected |
Cl_i | CorriasBuistICCModified | private |
Cl_o | CorriasBuistICCModified | private |
Cm | CorriasBuistICCModified | private |
Compute(double tStart, double tEnd, double tSamp=0.0) | AbstractCardiacCell | virtual |
ComputeDerivedQuantities(double time, const std::vector< double > &rState) | AbstractParameterisedSystem< std::vector< double > > | virtual |
ComputeDerivedQuantitiesFromCurrentState(double time) | AbstractParameterisedSystem< std::vector< double > > | |
ComputeExceptVoltage(double tStart, double tEnd) | AbstractCardiacCell | virtual |
conc | CorriasBuistICCModified | private |
CorriasBuistICCModified(boost::shared_ptr< AbstractIvpOdeSolver > pSolver, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus) | CorriasBuistICCModified | |
d_ACT | CorriasBuistICCModified | private |
d_INH | CorriasBuistICCModified | private |
d_IP3 | CorriasBuistICCModified | private |
deltaPsi | CorriasBuistICCModified | private |
deltaPsi_B | CorriasBuistICCModified | private |
deltaPsi_star | CorriasBuistICCModified | private |
DumpState(const std::string &rMessage) | AbstractParameterisedSystem< std::vector< double > > | protected |
DumpState(const std::string &rMessage, std::vector< double > Y) | AbstractParameterisedSystem< std::vector< double > > | protected |
DumpState(const std::string &rMessage, std::vector< double > Y, double time) | AbstractParameterisedSystem< std::vector< double > > | protected |
e2FoRTdPsiMdPsiS | CorriasBuistICCModified | private |
E_Cl | CorriasBuistICCModified | private |
E_K | CorriasBuistICCModified | private |
E_Na | CorriasBuistICCModified | private |
E_NSCC | CorriasBuistICCModified | private |
ebFoRTdPsiMdPsiS | CorriasBuistICCModified | private |
EvaluateYDerivatives(double time, const std::vector< double > &rY, std::vector< double > &rDY) | CorriasBuistICCModified | virtual |
F | CorriasBuistICCModified | private |
fc | CorriasBuistICCModified | private |
fe | CorriasBuistICCModified | private |
fm | CorriasBuistICCModified | private |
FoRT | CorriasBuistICCModified | private |
G_max_bk | CorriasBuistICCModified | private |
G_max_BK | CorriasBuistICCModified | private |
G_max_CaCl | CorriasBuistICCModified | private |
G_max_ERG | CorriasBuistICCModified | private |
G_max_kv11 | CorriasBuistICCModified | private |
G_max_Ltype | CorriasBuistICCModified | private |
G_max_Na | CorriasBuistICCModified | private |
G_max_NSCC | CorriasBuistICCModified | private |
G_max_VDDR | CorriasBuistICCModified | private |
GetAnyVariable(const std::string &rName, double time=0.0) | AbstractCardiacCell | virtual |
AbstractOdeSystem::GetAnyVariable(unsigned index, double time=0.0, std::vector< double > *pDerivedQuantities=NULL) | AbstractParameterisedSystem< std::vector< double > > | |
AbstractOdeSystem::GetAnyVariable(const std::string &rName, double time=0.0, std::vector< double > *pDerivedQuantities=NULL) | AbstractParameterisedSystem< std::vector< double > > | |
GetAnyVariableIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
GetAnyVariableUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
GetAnyVariableUnits(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
GetAttribute(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
GetCarbonMonoxideScaleFactor() | CorriasBuistICCModified | |
GetDerivedQuantityIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
GetDerivedQuantityUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
GetIIonic(const std::vector< double > *pStateVariables=NULL) | CorriasBuistICCModified | virtual |
GetInitialConditions() const | AbstractParameterisedSystem< std::vector< double > > | |
GetIntracellularAreaStimulus(double time) | AbstractCardiacCellInterface | |
GetIntracellularCalciumConcentration() | AbstractCardiacCellInterface | virtual |
GetIntracellularStimulus(double time) | AbstractCardiacCellInterface | |
GetLookupTableCollection() | AbstractCardiacCellInterface | inlinevirtual |
GetNumberOfAttributes() const | AbstractUntemplatedParameterisedSystem | |
GetNumberOfDerivedQuantities() const | AbstractUntemplatedParameterisedSystem | |
GetNumberOfParameters() const | AbstractCardiacCell | virtual |
GetNumberOfStateVariables() const | AbstractCardiacCell | virtual |
GetNumSlowValues() | AbstractCardiacCell | virtual |
GetParameter(const std::string &rParameterName) | AbstractCardiacCell | virtual |
GetParameter(unsigned parameterIndex) | AbstractCardiacCell | virtual |
AbstractOdeSystem::GetParameter(unsigned index) const | AbstractParameterisedSystem< std::vector< double > > | |
AbstractOdeSystem::GetParameter(const std::string &rName) const | AbstractParameterisedSystem< std::vector< double > > | |
GetParameterIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
GetParameterUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
GetSlowValues(std::vector< double > &rSlowValues) | AbstractCardiacCell | virtual |
GetSolver() const | AbstractCardiacCellInterface | |
GetStateMessage(const std::string &rMessage, std::vector< double > Y) | AbstractParameterisedSystem< std::vector< double > > | private |
GetStateVariable(unsigned index) const | AbstractParameterisedSystem< std::vector< double > > | |
GetStateVariable(const std::string &rName) const | AbstractParameterisedSystem< std::vector< double > > | |
GetStateVariableIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
GetStateVariables() | AbstractParameterisedSystem< std::vector< double > > | |
GetStateVariableUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
GetStdVecStateVariables() | AbstractCardiacCell | virtual |
GetStimulus(double time) | AbstractCardiacCellInterface | |
GetStimulusFunction() | AbstractCardiacCellInterface | |
GetStimulusFunction() const | AbstractCardiacCellInterface | |
GetSystemInformation() const | AbstractUntemplatedParameterisedSystem | |
GetSystemName() const | AbstractUntemplatedParameterisedSystem | |
GetUseAnalyticJacobian() | AbstractOdeSystem | |
GetVoltage() | AbstractCardiacCell | virtual |
GetVoltageIndex() | AbstractCardiacCellInterface | |
HasAnyVariable(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
HasAttribute(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
HasCellMLDefaultStimulus() | AbstractCardiacCellInterface | |
HasDerivedQuantity(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
HasParameter(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
HasStateVariable(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
Init() | AbstractCardiacCell | |
IsFastOnly() | AbstractCardiacCell | virtual |
J_ERleak | CorriasBuistICCModified | private |
J_max_leak | CorriasBuistICCModified | private |
J_max_PMCA | CorriasBuistICCModified | private |
J_max_PMCA_PU | CorriasBuistICCModified | private |
Jmax_IP3 | CorriasBuistICCModified | private |
Jmax_NaCa | CorriasBuistICCModified | private |
Jmax_serca | CorriasBuistICCModified | private |
Jmax_uni | CorriasBuistICCModified | private |
K_act | CorriasBuistICCModified | private |
K_Ca | CorriasBuistICCModified | private |
K_i | CorriasBuistICCModified | private |
K_Na | CorriasBuistICCModified | private |
K_o | CorriasBuistICCModified | private |
k_serca | CorriasBuistICCModified | private |
K_trans | CorriasBuistICCModified | private |
L | CorriasBuistICCModified | private |
load(Archive &archive, const unsigned int version) | AbstractOdeSystem | inlineprivate |
mDt | AbstractCardiacCell | protected |
mFixedVoltage | AbstractCardiacCellInterface | protected |
mFractionOfVDDRInPU | CorriasBuistICCModified | private |
mHasDefaultStimulusFromCellML | AbstractCardiacCellInterface | protected |
mIP3Concentration | CorriasBuistICCModified | private |
mIsUsedInTissue | AbstractCardiacCellInterface | protected |
mNumberOfStateVariables | AbstractUntemplatedParameterisedSystem | protected |
mParameters | AbstractParameterisedSystem< std::vector< double > > | protected |
mpIntracellularStimulus | AbstractCardiacCellInterface | protected |
mpOdeSolver | AbstractCardiacCellInterface | protected |
mpSystemInfo | AbstractUntemplatedParameterisedSystem | protected |
mScaleFactorCarbonMonoxide | CorriasBuistICCModified | private |
mScaleFactorSerca | CorriasBuistICCModified | private |
mSetVoltageDerivativeToZero | AbstractCardiacCellInterface | protected |
mStateVariables | AbstractParameterisedSystem< std::vector< double > > | protected |
mUseAnalyticJacobian | AbstractOdeSystem | protected |
mVoltageIndex | AbstractCardiacCellInterface | protected |
na | CorriasBuistICCModified | private |
Na_i | CorriasBuistICCModified | private |
Na_o | CorriasBuistICCModified | private |
NaPerm_o_Kperm | CorriasBuistICCModified | private |
P_cyto | CorriasBuistICCModified | private |
P_ER | CorriasBuistICCModified | private |
P_mito | CorriasBuistICCModified | private |
P_PU | CorriasBuistICCModified | private |
Q10Ca | CorriasBuistICCModified | private |
Q10K | CorriasBuistICCModified | private |
Q10Na | CorriasBuistICCModified | private |
R | CorriasBuistICCModified | private |
ResetToInitialConditions() | AbstractParameterisedSystem< std::vector< double > > | virtual |
rGetConstStateVariables() const | AbstractOdeSystem | |
rGetDerivedQuantityNames() const | AbstractUntemplatedParameterisedSystem | |
rGetDerivedQuantityUnits() const | AbstractUntemplatedParameterisedSystem | |
rGetParameterNames() const | AbstractUntemplatedParameterisedSystem | |
rGetParameterUnits() const | AbstractUntemplatedParameterisedSystem | |
rGetStateVariableNames() const | AbstractCardiacCell | virtual |
rGetStateVariables() | AbstractParameterisedSystem< std::vector< double > > | |
rGetStateVariableUnits() const | AbstractUntemplatedParameterisedSystem | |
RToF | CorriasBuistICCModified | private |
save(Archive &archive, const unsigned int version) const | AbstractOdeSystem | inlineprivate |
serialize(Archive &archive, const unsigned int version) | CorriasBuistICCModified | inlineprivate |
SetAnyVariable(unsigned index, double value) | AbstractParameterisedSystem< std::vector< double > > | |
SetAnyVariable(const std::string &rName, double value) | AbstractParameterisedSystem< std::vector< double > > | |
SetCarbonMonoxideScaleFactor(double scaleFactor) | CorriasBuistICCModified | |
SetDefaultInitialCondition(unsigned index, double initialCondition) | AbstractParameterisedSystem< std::vector< double > > | |
SetDefaultInitialConditions(const std::vector< double > &rInitialConditions) | AbstractParameterisedSystem< std::vector< double > > | |
SetFixedVoltage(double voltage) | AbstractCardiacCellInterface | |
SetFractionOfVDDRInPU(double fraction) | CorriasBuistICCModified | |
SetIntracellularStimulusFunction(boost::shared_ptr< AbstractStimulusFunction > pStimulus) | AbstractCardiacCellInterface | |
SetIP3Concentration(double concentration) | CorriasBuistICCModified | |
SetParameter(const std::string &rParameterName, double value) | AbstractCardiacCell | virtual |
AbstractOdeSystem::SetParameter(unsigned index, double value) | AbstractParameterisedSystem< std::vector< double > > | |
SetSercaPumpScaleFactor(double scaleFactor) | CorriasBuistICCModified | |
SetSlowValues(const std::vector< double > &rSlowValues) | AbstractCardiacCell | virtual |
SetSolver(boost::shared_ptr< AbstractIvpOdeSolver > pSolver) | AbstractCardiacCellInterface | |
SetState(CellModelState state) | AbstractCardiacCell | virtual |
SetStateVariable(unsigned index, double newValue) | AbstractCardiacCell | virtual |
SetStateVariable(const std::string &rName, double newValue) | AbstractCardiacCell | virtual |
SetStateVariables(const std::vector< double > &rVariables) | AbstractCardiacCell | virtual |
AbstractOdeSystem::SetStateVariables(const std::vector< double > &rStateVariables) | AbstractParameterisedSystem< std::vector< double > > | |
SetStimulusFunction(boost::shared_ptr< AbstractStimulusFunction > pStimulus) | AbstractCardiacCellInterface | |
SetStretch(double stretch) | AbstractCardiacCellInterface | inlinevirtual |
SetTimestep(double dt) | AbstractCardiacCell | virtual |
SetUsedInTissueSimulation(bool tissue=true) | AbstractCardiacCellInterface | |
SetVoltage(double voltage) | AbstractCardiacCell | virtual |
SetVoltageDerivativeToZero(bool clamp=true) | AbstractCardiacCellInterface | virtual |
SolveAndUpdateState(double tStart, double tEnd) | AbstractCardiacCell | virtual |
T | CorriasBuistICCModified | private |
T_correction_BK | CorriasBuistICCModified | private |
T_correction_Ca | CorriasBuistICCModified | private |
T_correction_K | CorriasBuistICCModified | private |
T_correction_Na | CorriasBuistICCModified | private |
T_exp | CorriasBuistICCModified | private |
tau_d_CaCl | CorriasBuistICCModified | private |
tau_d_ERG | CorriasBuistICCModified | private |
tau_d_kv11 | CorriasBuistICCModified | private |
tau_d_Ltype | CorriasBuistICCModified | private |
tau_d_Na | CorriasBuistICCModified | private |
tau_d_NSCC | CorriasBuistICCModified | private |
tau_d_VDDR | CorriasBuistICCModified | private |
tau_f_ca_Ltype | CorriasBuistICCModified | private |
tau_f_kv11 | CorriasBuistICCModified | private |
tau_f_Ltype | CorriasBuistICCModified | private |
tau_f_Na | CorriasBuistICCModified | private |
tau_f_VDDR | CorriasBuistICCModified | private |
tauh | CorriasBuistICCModified | private |
UseCellMLDefaultStimulus() | AbstractCardiacCellInterface | virtual |
V_cyto | CorriasBuistICCModified | private |
V_ER | CorriasBuistICCModified | private |
V_MITO | CorriasBuistICCModified | private |
V_PU | CorriasBuistICCModified | private |
VerifyStateVariables() | CorriasBuistICCModified | virtual |
Vol | CorriasBuistICCModified | private |
~AbstractCardiacCell() | AbstractCardiacCell | virtual |
~AbstractCardiacCellInterface() | AbstractCardiacCellInterface | virtual |
~AbstractOdeSystem() | AbstractOdeSystem | virtual |
~AbstractUntemplatedParameterisedSystem() | AbstractUntemplatedParameterisedSystem | virtual |
~CorriasBuistICCModified() | CorriasBuistICCModified | |