, including all inherited members.
| AbstractAssembler() | AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > | [inline] |
| AbstractDynamicAssemblerMixin() | AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 > | |
| AbstractLinearAssembler(unsigned numQuadPoints=2) | AbstractLinearAssembler< ELEMENT_DIM, SPACE_DIM, 2, false, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > | |
| AbstractStaticAssembler(unsigned numQuadPoints=2) | AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > | |
| AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, 2, false, SelfType > class | BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > | [friend] |
| ApplyDirichletConditions(Vec unusedVector, bool applyToMatrix) | AbstractLinearAssembler< ELEMENT_DIM, SPACE_DIM, 2, false, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > | [protected, virtual] |
| ApplyNeummanBoundaryConditions() | AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > | [inline, protected] |
| AssembleOnElement(Element< ELEMENT_DIM, SPACE_DIM > &rElement, c_matrix< double, PROBLEM_DIM *(ELEMENT_DIM+1), PROBLEM_DIM *(ELEMENT_DIM+1) > &rAElem, c_vector< double, PROBLEM_DIM *(ELEMENT_DIM+1)> &rBElem, bool assembleVector, bool assembleMatrix) | AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > | [protected, virtual] |
| AssembleOnSurfaceElement(const BoundaryElement< ELEMENT_DIM-1, SPACE_DIM > &rSurfaceElement, c_vector< double, PROBLEM_DIM *ELEMENT_DIM > &rBSurfElem) | AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > | [protected, virtual] |
| AssembleSystem(bool assembleVector, bool assembleMatrix, Vec currentSolutionOrGuess=NULL, double currentTime=0.0) | AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > | [protected, virtual] |
| BaseClassType typedef | BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > | [protected] |
| BasisFunction typedef | AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > | [protected] |
| BidomainDg0Assembler(AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh, BidomainPde< SPACE_DIM > *pPde, BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, 2 > *pBcc, unsigned numQuadPoints=2) | BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > | [inline] |
| BidomainMatrixBasedAssembler(AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh, BidomainPde< SPACE_DIM > *pPde, BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, 2 > *pBcc, unsigned numQuadPoints=2) | BidomainMatrixBasedAssembler< ELEMENT_DIM, SPACE_DIM > | [inline] |
| CheckCompatibilityCondition() | BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > | [inline, protected, virtual] |
| ComputeMatrixTerm(c_vector< double, ELEMENT_DIM+1 > &rPhi, c_matrix< double, ELEMENT_DIM, ELEMENT_DIM+1 > &rGradPhi, ChastePoint< SPACE_DIM > &rX, c_vector< double, 2 > &rU, c_matrix< double, 2, SPACE_DIM > &rGradU, Element< ELEMENT_DIM, SPACE_DIM > *pElement) | BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > | [inline, protected, virtual] |
| AbstractLinearAssembler< ELEMENT_DIM, SPACE_DIM, 2, false, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > >::ComputeMatrixTerm(c_vector< double, ELEMENT_DIM+1 > &rPhi, c_matrix< double, SPACE_DIM, ELEMENT_DIM+1 > &rGradPhi, ChastePoint< SPACE_DIM > &rX, c_vector< double, PROBLEM_DIM > &rU, c_matrix< double, PROBLEM_DIM, SPACE_DIM > &rGradU, Element< ELEMENT_DIM, SPACE_DIM > *pElement)=0 | AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > | [protected, pure virtual] |
| ComputeTransformedBasisFunctionDerivatives(const ChastePoint< ELEMENT_DIM > &rPoint, const c_matrix< double, ELEMENT_DIM, SPACE_DIM > &rInverseJacobian, c_matrix< double, SPACE_DIM, ELEMENT_DIM+1 > &rReturnValue) | AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > | [protected] |
| ComputeVectorSurfaceTerm(const BoundaryElement< ELEMENT_DIM-1, SPACE_DIM > &rSurfaceElement, c_vector< double, ELEMENT_DIM > &rPhi, ChastePoint< SPACE_DIM > &rX) | BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > | [inline, protected, virtual] |
| ComputeVectorTerm(c_vector< double, ELEMENT_DIM+1 > &rPhi, c_matrix< double, ELEMENT_DIM, ELEMENT_DIM+1 > &rGradPhi, ChastePoint< SPACE_DIM > &rX, c_vector< double, 2 > &u, c_matrix< double, 2, SPACE_DIM > &rGradU, Element< ELEMENT_DIM, SPACE_DIM > *pElement) | BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > | [inline, protected, virtual] |
| AbstractLinearAssembler< ELEMENT_DIM, SPACE_DIM, 2, false, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > >::ComputeVectorTerm(c_vector< double, ELEMENT_DIM+1 > &rPhi, c_matrix< double, SPACE_DIM, ELEMENT_DIM+1 > &rGradPhi, ChastePoint< SPACE_DIM > &rX, c_vector< double, PROBLEM_DIM > &rU, c_matrix< double, PROBLEM_DIM, SPACE_DIM > &rGradU, Element< ELEMENT_DIM, SPACE_DIM > *pElement)=0 | AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > | [protected, pure virtual] |
| ConstructVectorForMatrixBasedRhsAssembly(Vec existingSolution) | BidomainMatrixBasedAssembler< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
| DoMatrixBasedRhsAssembly(Vec currentSolution, double time) | AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 > | [protected] |
| E_DIM | BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > | [static] |
| FinaliseAssembleSystem(Vec existingSolution, double time) | BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > | [inline, protected, virtual] |
| FinaliseLinearSystem(Vec currentSolutionOrGuess, double currentTime, bool assembleVector, bool assembleMatrix) | AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > | [inline, protected, virtual] |
| GenerateNullBasis() const | BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > | [inline, protected, virtual] |
| GetCurrentSolutionOrGuessValue(unsigned nodeIndex, unsigned indexOfUnknown) | AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > | [protected, virtual] |
| GetLinearSystem() | AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > | [virtual] |
| IncrementInterpolatedQuantities(double phiI, const Node< SPACE_DIM > *pNode) | BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > | [inline, protected, virtual] |
| InitialiseForSolve(Vec initialSolution) | BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > | [inline, protected, virtual] |
| mCurrentSolutionOrGuessReplicated | AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > | [protected] |
| mDt | AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 > | [protected] |
| mDtInverse | AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 > | [protected] |
| mFixedExtracellularPotentialNodes | BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mIExtracellularStimulus | BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mIIntracellularStimulus | BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mIionic | BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mInitialCondition | AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 > | [protected] |
| mMatrixIsAssembled | AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 > | [protected] |
| mMatrixIsConstant | AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 > | [protected] |
| mNullSpaceCreated | BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mpBidomainPde | BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mpBidomainRhsMatrixAssembler | BidomainMatrixBasedAssembler< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mpBoundaryConditions | AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > | [protected] |
| mpConfig | BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mpLinearSystem | AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > | [protected] |
| mpMatrixForMatrixBasedRhsAssembly | AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 > | [protected] |
| mpMesh | AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > | [protected] |
| mpQuadRule | AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > | [protected] |
| mpSurfaceQuadRule | AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > | [protected] |
| mRowForAverageOfPhiZeroed | BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > | [protected] |
| mTend | AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 > | [protected] |
| mTimesSet | AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 > | [protected] |
| mTstart | AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 > | [protected] |
| mUseMatrixBasedRhsAssembly | AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 > | [protected] |
| mVectorForMatrixBasedRhsAssembly | AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 > | [protected] |
| P_DIM | BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > | [static] |
| PrepareForAssembleSystem(Vec existingSolution, double time) | BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > | [inline, protected, virtual] |
| PrepareForSolve() | AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > | [protected, virtual] |
| ProblemIsNonlinear() | AbstractLinearAssembler< ELEMENT_DIM, SPACE_DIM, 2, false, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > | [protected, virtual] |
| ResetInterpolatedQuantities() | BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > | [inline, protected, virtual] |
| rGetCurrentSolutionOrGuess() | AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > | [protected, virtual] |
| S_DIM | BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > | [static] |
| SelfType typedef | BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > | [protected] |
| SetBoundaryConditionsContainer(BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > *pBoundaryConditions) | AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > | [inline] |
| SetFixedExtracellularPotentialNodes(std::vector< unsigned > fixedExtracellularPotentialNodes) | BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > | [inline] |
| SetInitialCondition(Vec initialCondition) | AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 > | |
| SetMatrixIsConst(bool matrixIsConstant=true) | AbstractLinearAssembler< ELEMENT_DIM, SPACE_DIM, 2, false, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > | [protected, virtual] |
| SetMatrixIsConstant(bool matrixIsConstant=true) | AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 > | |
| SetMatrixIsNotAssembled() | AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 > | |
| SetMesh(AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh) | AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > | |
| SetNumberOfQuadraturePointsPerDimension(unsigned numQuadPoints) | AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > | |
| SetRowForAverageOfPhiZeroed(unsigned rowMeanPhiEZero) | BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > | [inline] |
| SetTimes(double tStart, double tEnd, double dt) | AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 > | |
| AbstractLinearAssembler< ELEMENT_DIM, SPACE_DIM, 2, false, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > >::Solve(Vec currentSolutionOrGuess=NULL, double currentTime=0.0) | AbstractLinearAssembler< ELEMENT_DIM, SPACE_DIM, 2, false, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > | [virtual] |
| AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 >::Solve(Vec currentSolutionOrGuess=NULL, double currentTime=0.0) | AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 > | |
| StaticSolve(Vec currentSolutionOrGuess=NULL, double currentTime=0.0, bool assembleMatrix=true) | AbstractLinearAssembler< ELEMENT_DIM, SPACE_DIM, 2, false, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > | [protected, virtual] |
| SurfaceBasisFunction typedef | AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > | [protected] |
| ~AbstractAssembler() | AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > | [inline, virtual] |
| ~AbstractLinearAssembler() | AbstractLinearAssembler< ELEMENT_DIM, SPACE_DIM, 2, false, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > | |
| ~AbstractStaticAssembler() | AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > | [virtual] |
| ~BidomainDg0Assembler() | BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > | [inline] |
| ~BidomainMatrixBasedAssembler() | BidomainMatrixBasedAssembler< ELEMENT_DIM, SPACE_DIM > | [inline] |
