BidomainMatrixBasedAssembler< ELEMENT_DIM, SPACE_DIM > Member List

This is the complete list of members for BidomainMatrixBasedAssembler< ELEMENT_DIM, SPACE_DIM >, including all inherited members.

AbstractAssembler()AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > [inline]
AbstractDynamicAssemblerMixin()AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 >
AbstractLinearAssembler(unsigned numQuadPoints=2)AbstractLinearAssembler< ELEMENT_DIM, SPACE_DIM, 2, false, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > >
AbstractStaticAssembler(unsigned numQuadPoints=2)AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > >
AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, 2, false, SelfType > classBidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > [friend]
ApplyDirichletConditions(Vec unusedVector, bool applyToMatrix)AbstractLinearAssembler< ELEMENT_DIM, SPACE_DIM, 2, false, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > [protected, virtual]
ApplyNeummanBoundaryConditions()AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > [inline, protected]
AssembleOnElement(Element< ELEMENT_DIM, SPACE_DIM > &rElement, c_matrix< double, PROBLEM_DIM *(ELEMENT_DIM+1), PROBLEM_DIM *(ELEMENT_DIM+1) > &rAElem, c_vector< double, PROBLEM_DIM *(ELEMENT_DIM+1)> &rBElem, bool assembleVector, bool assembleMatrix)AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > [protected, virtual]
AssembleOnSurfaceElement(const BoundaryElement< ELEMENT_DIM-1, SPACE_DIM > &rSurfaceElement, c_vector< double, PROBLEM_DIM *ELEMENT_DIM > &rBSurfElem)AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > [protected, virtual]
AssembleSystem(bool assembleVector, bool assembleMatrix, Vec currentSolutionOrGuess=NULL, double currentTime=0.0)AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > [protected, virtual]
BaseClassType typedefBidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > [protected]
BasisFunction typedefAbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > [protected]
BidomainDg0Assembler(AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh, BidomainPde< SPACE_DIM > *pPde, BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, 2 > *pBcc, unsigned numQuadPoints=2)BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > [inline]
BidomainMatrixBasedAssembler(AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh, BidomainPde< SPACE_DIM > *pPde, BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, 2 > *pBcc, unsigned numQuadPoints=2)BidomainMatrixBasedAssembler< ELEMENT_DIM, SPACE_DIM > [inline]
CheckCompatibilityCondition()BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > [inline, protected, virtual]
ComputeMatrixTerm(c_vector< double, ELEMENT_DIM+1 > &rPhi, c_matrix< double, ELEMENT_DIM, ELEMENT_DIM+1 > &rGradPhi, ChastePoint< SPACE_DIM > &rX, c_vector< double, 2 > &rU, c_matrix< double, 2, SPACE_DIM > &rGradU, Element< ELEMENT_DIM, SPACE_DIM > *pElement)BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > [inline, protected, virtual]
AbstractLinearAssembler< ELEMENT_DIM, SPACE_DIM, 2, false, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > >::ComputeMatrixTerm(c_vector< double, ELEMENT_DIM+1 > &rPhi, c_matrix< double, SPACE_DIM, ELEMENT_DIM+1 > &rGradPhi, ChastePoint< SPACE_DIM > &rX, c_vector< double, PROBLEM_DIM > &rU, c_matrix< double, PROBLEM_DIM, SPACE_DIM > &rGradU, Element< ELEMENT_DIM, SPACE_DIM > *pElement)=0AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > [protected, pure virtual]
ComputeTransformedBasisFunctionDerivatives(const ChastePoint< ELEMENT_DIM > &rPoint, const c_matrix< double, ELEMENT_DIM, SPACE_DIM > &rInverseJacobian, c_matrix< double, SPACE_DIM, ELEMENT_DIM+1 > &rReturnValue)AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > [protected]
ComputeVectorSurfaceTerm(const BoundaryElement< ELEMENT_DIM-1, SPACE_DIM > &rSurfaceElement, c_vector< double, ELEMENT_DIM > &rPhi, ChastePoint< SPACE_DIM > &rX)BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > [inline, protected, virtual]
ComputeVectorTerm(c_vector< double, ELEMENT_DIM+1 > &rPhi, c_matrix< double, ELEMENT_DIM, ELEMENT_DIM+1 > &rGradPhi, ChastePoint< SPACE_DIM > &rX, c_vector< double, 2 > &u, c_matrix< double, 2, SPACE_DIM > &rGradU, Element< ELEMENT_DIM, SPACE_DIM > *pElement)BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > [inline, protected, virtual]
AbstractLinearAssembler< ELEMENT_DIM, SPACE_DIM, 2, false, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > >::ComputeVectorTerm(c_vector< double, ELEMENT_DIM+1 > &rPhi, c_matrix< double, SPACE_DIM, ELEMENT_DIM+1 > &rGradPhi, ChastePoint< SPACE_DIM > &rX, c_vector< double, PROBLEM_DIM > &rU, c_matrix< double, PROBLEM_DIM, SPACE_DIM > &rGradU, Element< ELEMENT_DIM, SPACE_DIM > *pElement)=0AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > [protected, pure virtual]
ConstructVectorForMatrixBasedRhsAssembly(Vec existingSolution)BidomainMatrixBasedAssembler< ELEMENT_DIM, SPACE_DIM > [inline, virtual]
DoMatrixBasedRhsAssembly(Vec currentSolution, double time)AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 > [protected]
E_DIMBidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > [static]
FinaliseAssembleSystem(Vec existingSolution, double time)BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > [inline, protected, virtual]
FinaliseLinearSystem(Vec currentSolutionOrGuess, double currentTime, bool assembleVector, bool assembleMatrix)AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > [inline, protected, virtual]
GenerateNullBasis() const BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > [inline, protected, virtual]
GetCurrentSolutionOrGuessValue(unsigned nodeIndex, unsigned indexOfUnknown)AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > [protected, virtual]
GetLinearSystem()AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > [virtual]
IncrementInterpolatedQuantities(double phiI, const Node< SPACE_DIM > *pNode)BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > [inline, protected, virtual]
InitialiseForSolve(Vec initialSolution)BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > [inline, protected, virtual]
mCurrentSolutionOrGuessReplicatedAbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > [protected]
mDtAbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 > [protected]
mDtInverseAbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 > [protected]
mFixedExtracellularPotentialNodesBidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > [protected]
mIExtracellularStimulusBidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > [protected]
mIIntracellularStimulusBidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > [protected]
mIionicBidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > [protected]
mInitialConditionAbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 > [protected]
mMatrixIsAssembledAbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 > [protected]
mMatrixIsConstantAbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 > [protected]
mNullSpaceCreatedBidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > [protected]
mpBidomainPdeBidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > [protected]
mpBidomainRhsMatrixAssemblerBidomainMatrixBasedAssembler< ELEMENT_DIM, SPACE_DIM > [protected]
mpBoundaryConditionsAbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > [protected]
mpConfigBidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > [protected]
mpLinearSystemAbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > [protected]
mpMatrixForMatrixBasedRhsAssemblyAbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 > [protected]
mpMeshAbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > [protected]
mpQuadRuleAbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > [protected]
mpSurfaceQuadRuleAbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > [protected]
mRowForAverageOfPhiZeroedBidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > [protected]
mTendAbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 > [protected]
mTimesSetAbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 > [protected]
mTstartAbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 > [protected]
mUseMatrixBasedRhsAssemblyAbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 > [protected]
mVectorForMatrixBasedRhsAssemblyAbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 > [protected]
P_DIMBidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > [static]
PrepareForAssembleSystem(Vec existingSolution, double time)BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > [inline, protected, virtual]
PrepareForSolve()AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > [protected, virtual]
ProblemIsNonlinear()AbstractLinearAssembler< ELEMENT_DIM, SPACE_DIM, 2, false, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > [protected, virtual]
ResetInterpolatedQuantities()BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > [inline, protected, virtual]
rGetCurrentSolutionOrGuess()AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > [protected, virtual]
S_DIMBidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > [static]
SelfType typedefBidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > [protected]
SetBoundaryConditionsContainer(BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > *pBoundaryConditions)AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > [inline]
SetFixedExtracellularPotentialNodes(std::vector< unsigned > fixedExtracellularPotentialNodes)BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > [inline]
SetInitialCondition(Vec initialCondition)AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 >
SetMatrixIsConst(bool matrixIsConstant=true)AbstractLinearAssembler< ELEMENT_DIM, SPACE_DIM, 2, false, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > [protected, virtual]
SetMatrixIsConstant(bool matrixIsConstant=true)AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 >
SetMatrixIsNotAssembled()AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 >
SetMesh(AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh)AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > >
SetNumberOfQuadraturePointsPerDimension(unsigned numQuadPoints)AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > >
SetRowForAverageOfPhiZeroed(unsigned rowMeanPhiEZero)BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > [inline]
SetTimes(double tStart, double tEnd, double dt)AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 >
AbstractLinearAssembler< ELEMENT_DIM, SPACE_DIM, 2, false, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > >::Solve(Vec currentSolutionOrGuess=NULL, double currentTime=0.0)AbstractLinearAssembler< ELEMENT_DIM, SPACE_DIM, 2, false, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > [virtual]
AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 >::Solve(Vec currentSolutionOrGuess=NULL, double currentTime=0.0)AbstractDynamicAssemblerMixin< ELEMENT_DIM, SPACE_DIM, 2 >
StaticSolve(Vec currentSolutionOrGuess=NULL, double currentTime=0.0, bool assembleMatrix=true)AbstractLinearAssembler< ELEMENT_DIM, SPACE_DIM, 2, false, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > [protected, virtual]
SurfaceBasisFunction typedefAbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > [protected]
~AbstractAssembler()AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > [inline, virtual]
~AbstractLinearAssembler()AbstractLinearAssembler< ELEMENT_DIM, SPACE_DIM, 2, false, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > >
~AbstractStaticAssembler()AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > > [virtual]
~BidomainDg0Assembler()BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > [inline]
~BidomainMatrixBasedAssembler()BidomainMatrixBasedAssembler< ELEMENT_DIM, SPACE_DIM > [inline]


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