Hdf5ToMeshalyzerConverter Class Reference

#include <Hdf5ToMeshalyzerConverter.hpp>

Collaboration diagram for Hdf5ToMeshalyzerConverter:

[legend]

List of all members.

Public Member Functions
	Hdf5ToMeshalyzerConverter (std::string inputDirectory, std::string fileBaseName)
Private Member Functions
void	Write (std::string type)
Private Attributes
Hdf5DataReader *	mpReader
std::string	mFileBaseName

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Detailed Description

This class converts from Hdf5 format to meshalyzer format, ie, for voltage, one file, which looks like

V_node_0_time_0 .. V_node_N_time_0 V_node_0_time_1 .. V_node_N_time_1 V_node_0_time_2 .. V_node_N_time_M

The files that are written are [base_name]_V.dat or [base_name]_Phi_e.dat, where [base_name] is the base name of the original .h5 file. The new files are written in the same directory as the .h5 file. All paths are relative to the CHASTE_TEST_OUTPUT directory.

Definition at line 54 of file Hdf5ToMeshalyzerConverter.hpp.

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Constructor & Destructor Documentation

Hdf5ToMeshalyzerConverter::Hdf5ToMeshalyzerConverter	(	std::string	inputDirectory,
		std::string	fileBaseName
	)

Constructor, which does the conversion.

Parameters:

	inputDirectory	The input directory, relative to CHASTE_TEST_OUTPUT, where the .h5 file has been written
	fileBaseName	The base name of the data file.

Definition at line 82 of file Hdf5ToMeshalyzerConverter.cpp.

References PetscTools::AmMaster(), HeartConfig::GetPrintingTimeStep(), Hdf5DataReader::GetUnlimitedDimensionValues(), Hdf5DataReader::GetVariableNames(), HeartConfig::Instance(), mFileBaseName, mpReader, OutputFileHandler::OpenOutputFile(), and Write().

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Member Function Documentation

void Hdf5ToMeshalyzerConverter::Write

(

std::string

type

)

[private]

A helper method which takes in a string, which must be 'V' or 'Phi_e' and reads the data corresponding to that string, writing it out in meshalyzer format.

Parameters:

type

- the type of data stored in this file (V/Phi_e)

Definition at line 42 of file Hdf5ToMeshalyzerConverter.cpp.

References PetscTools::AmMaster(), DistributedVectorFactory::CreateVec(), Hdf5DataReader::GetNumberOfRows(), Hdf5DataReader::GetUnlimitedDimensionValues(), Hdf5DataReader::GetVariableOverNodes(), HeartConfig::Instance(), mFileBaseName, mpReader, OutputFileHandler::OpenOutputFile(), and ReplicatableVector::size().

Referenced by Hdf5ToMeshalyzerConverter().

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Member Data Documentation

Hdf5DataReader* Hdf5ToMeshalyzerConverter::mpReader [private]

Pointer to reader of the file to be converted

Definition at line 57 of file Hdf5ToMeshalyzerConverter.hpp.

Referenced by Hdf5ToMeshalyzerConverter(), and Write().

std::string Hdf5ToMeshalyzerConverter::mFileBaseName [private]

Base name for the files [basename]_V.dat etc.

Definition at line 58 of file Hdf5ToMeshalyzerConverter.hpp.

Referenced by Hdf5ToMeshalyzerConverter(), and Write().

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The documentation for this class was generated from the following files:

• /tmp/release_1.1/heart/src/postprocessing/Hdf5ToMeshalyzerConverter.hpp
• /tmp/release_1.1/heart/src/postprocessing/Hdf5ToMeshalyzerConverter.cpp